Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt macB and macA overlap by 4 nucleotides macA and ybjX are separated by 114 nucleotides
OKFHMN_05805: macB - macrolide ABC transporter ATP-binding protein/permease MacB, at 1,019,913 to 1,021,859
macB
OKFHMN_05810: macA - macrolide transporter subunit MacA, at 1,021,856 to 1,022,971
macA
OKFHMN_05815: ybjX - Uncharacterized protein YbjX, at 1,023,086 to 1,024,078
ybjX
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1020.927 kb on - strand, within macB at 1020.930 kb on - strand, within macB at 1020.930 kb on - strand, within macB at 1020.941 kb on + strand, within macB at 1021.021 kb on - strand, within macB at 1021.021 kb on - strand, within macB at 1021.023 kb on - strand, within macB at 1021.023 kb on - strand, within macB at 1021.023 kb on - strand, within macB at 1021.275 kb on - strand, within macB at 1021.442 kb on - strand, within macB at 1021.442 kb on - strand, within macB at 1021.534 kb on - strand, within macB at 1021.534 kb on - strand, within macB at 1021.703 kb on + strand at 1021.766 kb on - strand at 1021.840 kb on - strand at 1021.840 kb on - strand at 1021.943 kb on - strand at 1022.145 kb on + strand, within macA at 1022.146 kb on - strand, within macA at 1022.186 kb on + strand, within macA at 1022.187 kb on - strand, within macA at 1022.270 kb on + strand, within macA at 1022.315 kb on - strand, within macA at 1022.425 kb on - strand, within macA at 1022.640 kb on - strand, within macA at 1022.724 kb on - strand, within macA at 1022.898 kb on - strand at 1022.903 kb on - strand at 1023.061 kb on + strand at 1023.107 kb on - strand at 1023.107 kb on - strand at 1023.154 kb on + strand at 1023.154 kb on + strand at 1023.155 kb on - strand at 1023.194 kb on - strand, within ybjX at 1023.426 kb on + strand, within ybjX at 1023.426 kb on + strand, within ybjX at 1023.437 kb on + strand, within ybjX at 1023.444 kb on + strand, within ybjX at 1023.457 kb on + strand, within ybjX at 1023.457 kb on + strand, within ybjX at 1023.480 kb on + strand, within ybjX at 1023.482 kb on + strand, within ybjX at 1023.616 kb on + strand, within ybjX at 1023.616 kb on + strand, within ybjX at 1023.616 kb on + strand, within ybjX at 1023.676 kb on + strand, within ybjX at 1023.966 kb on + strand, within ybjX
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,020,927 - macB OKFHMN_05805 0.52 +0.3 1,020,930 - macB OKFHMN_05805 0.52 +2.5 1,020,930 - macB OKFHMN_05805 0.52 +1.0 1,020,941 + macB OKFHMN_05805 0.53 +0.8 1,021,021 - macB OKFHMN_05805 0.57 -0.3 1,021,021 - macB OKFHMN_05805 0.57 +0.4 1,021,023 - macB OKFHMN_05805 0.57 -0.3 1,021,023 - macB OKFHMN_05805 0.57 +0.2 1,021,023 - macB OKFHMN_05805 0.57 +0.8 1,021,275 - macB OKFHMN_05805 0.70 -1.0 1,021,442 - macB OKFHMN_05805 0.79 -0.7 1,021,442 - macB OKFHMN_05805 0.79 -0.2 1,021,534 - macB OKFHMN_05805 0.83 +0.4 1,021,534 - macB OKFHMN_05805 0.83 -0.0 1,021,703 + -1.2 1,021,766 - +0.1 1,021,840 - -0.4 1,021,840 - -0.4 1,021,943 - +0.3 1,022,145 + macA OKFHMN_05810 0.26 +0.5 1,022,146 - macA OKFHMN_05810 0.26 +0.8 1,022,186 + macA OKFHMN_05810 0.30 +0.1 1,022,187 - macA OKFHMN_05810 0.30 -0.4 1,022,270 + macA OKFHMN_05810 0.37 -0.2 1,022,315 - macA OKFHMN_05810 0.41 -0.4 1,022,425 - macA OKFHMN_05810 0.51 +1.1 1,022,640 - macA OKFHMN_05810 0.70 -1.8 1,022,724 - macA OKFHMN_05810 0.78 +0.6 1,022,898 - -0.7 1,022,903 - -0.8 1,023,061 + +0.6 1,023,107 - +0.7 1,023,107 - -0.3 1,023,154 + +0.5 1,023,154 + +0.2 1,023,155 - +0.6 1,023,194 - ybjX OKFHMN_05815 0.11 +0.2 1,023,426 + ybjX OKFHMN_05815 0.34 -0.1 1,023,426 + ybjX OKFHMN_05815 0.34 +0.7 1,023,437 + ybjX OKFHMN_05815 0.35 -0.2 1,023,444 + ybjX OKFHMN_05815 0.36 +0.8 1,023,457 + ybjX OKFHMN_05815 0.37 +0.2 1,023,457 + ybjX OKFHMN_05815 0.37 -0.4 1,023,480 + ybjX OKFHMN_05815 0.40 +0.8 1,023,482 + ybjX OKFHMN_05815 0.40 +0.9 1,023,616 + ybjX OKFHMN_05815 0.53 -0.2 1,023,616 + ybjX OKFHMN_05815 0.53 -1.2 1,023,616 + ybjX OKFHMN_05815 0.53 -0.6 1,023,676 + ybjX OKFHMN_05815 0.59 +0.5 1,023,966 + ybjX OKFHMN_05815 0.89 +0.0
Or see this region's nucleotide sequence