Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gloC and ycbK are separated by 26 nucleotides ycbK and ldtD are separated by 180 nucleotides ldtD and mukB are separated by 260 nucleotides
OKFHMN_05390: gloC - hydroxyacylglutathione hydrolase GloC, at 902,229 to 902,876
gloC
OKFHMN_05395: ycbK - Uncharacterized protein YcbK, at 902,903 to 903,451
ycbK
OKFHMN_05400: ldtD - L,D-transpeptidase, at 903,632 to 905,479
ldtD
OKFHMN_05405: mukB - chromosome partition protein MukB, at 905,740 to 910,200
mukB
Position (kb) 903
904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2 at 902.870 kb on - strand at 902.870 kb on - strand at 902.877 kb on - strand at 902.905 kb on - strand at 902.933 kb on - strand at 902.947 kb on + strand at 902.948 kb on - strand at 902.964 kb on - strand, within ycbK at 902.964 kb on - strand, within ycbK at 902.980 kb on + strand, within ycbK at 902.981 kb on - strand, within ycbK at 902.981 kb on - strand, within ycbK at 903.002 kb on - strand, within ycbK at 903.245 kb on - strand, within ycbK at 903.271 kb on - strand, within ycbK at 903.455 kb on - strand at 903.465 kb on - strand at 903.595 kb on - strand at 903.642 kb on - strand at 903.700 kb on - strand at 903.793 kb on - strand at 903.793 kb on - strand at 903.793 kb on - strand at 903.800 kb on - strand at 903.863 kb on - strand, within ldtD at 903.920 kb on - strand, within ldtD at 903.991 kb on + strand, within ldtD at 904.200 kb on - strand, within ldtD at 904.526 kb on - strand, within ldtD at 904.613 kb on - strand, within ldtD at 904.706 kb on + strand, within ldtD at 904.706 kb on + strand, within ldtD at 904.707 kb on - strand, within ldtD at 904.946 kb on - strand, within ldtD at 904.951 kb on + strand, within ldtD at 904.951 kb on + strand, within ldtD at 904.951 kb on + strand, within ldtD at 904.952 kb on - strand, within ldtD at 904.952 kb on - strand, within ldtD at 904.955 kb on + strand, within ldtD at 905.067 kb on - strand, within ldtD at 905.080 kb on + strand, within ldtD at 905.188 kb on - strand, within ldtD at 905.376 kb on - strand at 905.468 kb on - strand at 905.523 kb on + strand at 905.524 kb on - strand at 905.604 kb on + strand at 905.606 kb on + strand at 905.626 kb on + strand at 905.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 902,870 - +0.8 902,870 - +0.6 902,877 - -2.3 902,905 - +0.1 902,933 - +0.8 902,947 + -0.2 902,948 - -0.8 902,964 - ycbK OKFHMN_05395 0.11 -0.8 902,964 - ycbK OKFHMN_05395 0.11 -0.2 902,980 + ycbK OKFHMN_05395 0.14 +0.1 902,981 - ycbK OKFHMN_05395 0.14 +0.1 902,981 - ycbK OKFHMN_05395 0.14 +0.5 903,002 - ycbK OKFHMN_05395 0.18 +0.0 903,245 - ycbK OKFHMN_05395 0.62 +0.3 903,271 - ycbK OKFHMN_05395 0.67 +1.1 903,455 - +1.1 903,465 - +0.3 903,595 - +0.7 903,642 - +0.6 903,700 - -0.9 903,793 - +0.4 903,793 - -0.7 903,793 - +0.4 903,800 - +0.7 903,863 - ldtD OKFHMN_05400 0.12 -1.0 903,920 - ldtD OKFHMN_05400 0.16 +0.1 903,991 + ldtD OKFHMN_05400 0.19 -1.4 904,200 - ldtD OKFHMN_05400 0.31 +0.1 904,526 - ldtD OKFHMN_05400 0.48 -1.0 904,613 - ldtD OKFHMN_05400 0.53 +0.0 904,706 + ldtD OKFHMN_05400 0.58 -0.6 904,706 + ldtD OKFHMN_05400 0.58 -0.3 904,707 - ldtD OKFHMN_05400 0.58 -1.0 904,946 - ldtD OKFHMN_05400 0.71 -1.1 904,951 + ldtD OKFHMN_05400 0.71 -1.9 904,951 + ldtD OKFHMN_05400 0.71 +0.5 904,951 + ldtD OKFHMN_05400 0.71 +0.4 904,952 - ldtD OKFHMN_05400 0.71 +0.4 904,952 - ldtD OKFHMN_05400 0.71 +0.2 904,955 + ldtD OKFHMN_05400 0.72 -0.1 905,067 - ldtD OKFHMN_05400 0.78 -0.2 905,080 + ldtD OKFHMN_05400 0.78 +0.3 905,188 - ldtD OKFHMN_05400 0.84 -2.1 905,376 - +0.9 905,468 - +1.7 905,523 + +2.0 905,524 - +0.4 905,604 + +0.4 905,606 + +0.2 905,626 + +0.0 905,627 - +0.2
Or see this region's nucleotide sequence