Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssuC and ssuB overlap by 4 nucleotides ssuB and pepN are separated by 42 nucleotides pepN and pncB are separated by 265 nucleotides
OKFHMN_05355: ssuC - aliphatic sulfonate ABC transporter permease SsuC, at 891,865 to 892,656
ssuC
OKFHMN_05360: ssuB - aliphatic sulfonates ABC transporter ATP-binding protein, at 892,653 to 893,420
ssuB
OKFHMN_05365: pepN - aminopeptidase N, at 893,463 to 896,075
pepN
OKFHMN_05370: pncB - nicotinate phosphoribosyltransferase, at 896,341 to 897,543
pncB
Position (kb) 893
894
895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 892.548 kb on + strand, within ssuC at 892.652 kb on + strand at 892.652 kb on + strand at 892.702 kb on + strand at 892.949 kb on + strand, within ssuB at 892.968 kb on - strand, within ssuB at 893.465 kb on - strand at 893.570 kb on - strand at 893.610 kb on + strand at 893.835 kb on - strand, within pepN at 894.033 kb on - strand, within pepN at 894.085 kb on + strand, within pepN at 894.109 kb on - strand, within pepN at 894.297 kb on + strand, within pepN at 894.352 kb on + strand, within pepN at 894.352 kb on + strand, within pepN at 894.444 kb on - strand, within pepN at 894.444 kb on - strand, within pepN at 894.629 kb on + strand, within pepN at 894.629 kb on + strand, within pepN at 894.908 kb on + strand, within pepN at 895.047 kb on - strand, within pepN at 895.111 kb on - strand, within pepN at 895.181 kb on - strand, within pepN at 895.181 kb on - strand, within pepN at 895.253 kb on - strand, within pepN at 895.299 kb on - strand, within pepN at 895.326 kb on - strand, within pepN at 895.327 kb on + strand, within pepN at 895.328 kb on - strand, within pepN at 895.328 kb on - strand, within pepN at 895.489 kb on - strand, within pepN at 895.685 kb on - strand, within pepN at 895.692 kb on - strand, within pepN at 895.694 kb on + strand, within pepN at 895.694 kb on + strand, within pepN at 895.800 kb on - strand, within pepN at 895.800 kb on - strand, within pepN at 895.878 kb on - strand at 896.038 kb on + strand at 896.051 kb on - strand at 896.075 kb on + strand at 896.087 kb on - strand at 896.097 kb on - strand at 896.178 kb on - strand at 896.198 kb on + strand at 896.199 kb on - strand at 896.208 kb on - strand at 896.233 kb on + strand at 896.233 kb on + strand at 896.234 kb on - strand at 896.272 kb on - strand at 896.299 kb on - strand at 896.307 kb on - strand at 896.340 kb on + strand at 896.341 kb on - strand at 896.341 kb on - strand at 896.394 kb on + strand at 896.394 kb on + strand at 896.403 kb on + strand at 896.431 kb on + strand at 896.499 kb on + strand, within pncB at 896.590 kb on + strand, within pncB at 896.595 kb on + strand, within pncB at 896.596 kb on - strand, within pncB at 896.835 kb on + strand, within pncB at 896.835 kb on + strand, within pncB at 896.836 kb on - strand, within pncB at 896.950 kb on + strand, within pncB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 892,548 + ssuC OKFHMN_05355 0.86 +0.1 892,652 + -0.7 892,652 + -0.4 892,702 + -0.4 892,949 + ssuB OKFHMN_05360 0.39 +2.3 892,968 - ssuB OKFHMN_05360 0.41 +0.7 893,465 - +0.8 893,570 - +0.4 893,610 + -0.9 893,835 - pepN OKFHMN_05365 0.14 +0.2 894,033 - pepN OKFHMN_05365 0.22 -0.5 894,085 + pepN OKFHMN_05365 0.24 +0.1 894,109 - pepN OKFHMN_05365 0.25 -0.4 894,297 + pepN OKFHMN_05365 0.32 -0.3 894,352 + pepN OKFHMN_05365 0.34 -2.5 894,352 + pepN OKFHMN_05365 0.34 -0.2 894,444 - pepN OKFHMN_05365 0.38 -0.4 894,444 - pepN OKFHMN_05365 0.38 -0.3 894,629 + pepN OKFHMN_05365 0.45 -0.5 894,629 + pepN OKFHMN_05365 0.45 +2.2 894,908 + pepN OKFHMN_05365 0.55 -2.9 895,047 - pepN OKFHMN_05365 0.61 -0.8 895,111 - pepN OKFHMN_05365 0.63 +0.4 895,181 - pepN OKFHMN_05365 0.66 -0.4 895,181 - pepN OKFHMN_05365 0.66 +0.5 895,253 - pepN OKFHMN_05365 0.69 -0.6 895,299 - pepN OKFHMN_05365 0.70 -0.0 895,326 - pepN OKFHMN_05365 0.71 -0.3 895,327 + pepN OKFHMN_05365 0.71 -1.4 895,328 - pepN OKFHMN_05365 0.71 +0.5 895,328 - pepN OKFHMN_05365 0.71 -0.2 895,489 - pepN OKFHMN_05365 0.78 -0.3 895,685 - pepN OKFHMN_05365 0.85 +0.4 895,692 - pepN OKFHMN_05365 0.85 +0.1 895,694 + pepN OKFHMN_05365 0.85 -0.7 895,694 + pepN OKFHMN_05365 0.85 -2.6 895,800 - pepN OKFHMN_05365 0.89 +0.1 895,800 - pepN OKFHMN_05365 0.89 +0.6 895,878 - -2.8 896,038 + +0.0 896,051 - +0.5 896,075 + -1.3 896,087 - +1.2 896,097 - +0.4 896,178 - +0.5 896,198 + -0.0 896,199 - -0.0 896,208 - +0.2 896,233 + -0.3 896,233 + +1.0 896,234 - +0.1 896,272 - -0.6 896,299 - +0.3 896,307 - +1.2 896,340 + -1.9 896,341 - -1.2 896,341 - +0.3 896,394 + -0.7 896,394 + -1.3 896,403 + -0.2 896,431 + -1.1 896,499 + pncB OKFHMN_05370 0.13 +2.3 896,590 + pncB OKFHMN_05370 0.21 -0.5 896,595 + pncB OKFHMN_05370 0.21 +0.3 896,596 - pncB OKFHMN_05370 0.21 -0.0 896,835 + pncB OKFHMN_05370 0.41 -0.3 896,835 + pncB OKFHMN_05370 0.41 -0.7 896,836 - pncB OKFHMN_05370 0.41 +3.1 896,950 + pncB OKFHMN_05370 0.51 +0.3
Or see this region's nucleotide sequence