Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04360 and OKFHMN_04365 are separated by 325 nucleotides OKFHMN_04365 and OKFHMN_04370 are separated by 161 nucleotides OKFHMN_04370 and OKFHMN_04375 are separated by 154 nucleotides
OKFHMN_04360: OKFHMN_04360 - IS66-like element ISEc8 family transposase, at 695,268 to 696,806
_04360
OKFHMN_04365: OKFHMN_04365 - hypothetical protein, at 697,132 to 697,401
_04365
OKFHMN_04370: OKFHMN_04370 - DEAD/DEAH box helicase, at 697,563 to 699,923
_04370
OKFHMN_04375: OKFHMN_04375 - Inovirus Gp2 family protein, at 700,078 to 700,641
_04375
Position (kb) 697
698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.102 kb on - strand at 697.361 kb on - strand, within OKFHMN_04365 at 697.488 kb on + strand at 697.564 kb on + strand at 697.613 kb on + strand at 697.730 kb on - strand at 697.737 kb on + strand at 697.812 kb on - strand, within OKFHMN_04370 at 698.117 kb on + strand, within OKFHMN_04370 at 698.198 kb on - strand, within OKFHMN_04370 at 698.202 kb on - strand, within OKFHMN_04370 at 698.427 kb on - strand, within OKFHMN_04370 at 698.529 kb on - strand, within OKFHMN_04370 at 698.564 kb on + strand, within OKFHMN_04370 at 698.742 kb on + strand, within OKFHMN_04370 at 698.834 kb on + strand, within OKFHMN_04370 at 698.855 kb on - strand, within OKFHMN_04370 at 699.066 kb on - strand, within OKFHMN_04370 at 699.280 kb on + strand, within OKFHMN_04370 at 699.318 kb on - strand, within OKFHMN_04370 at 699.319 kb on + strand, within OKFHMN_04370 at 699.324 kb on - strand, within OKFHMN_04370 at 699.324 kb on - strand, within OKFHMN_04370 at 699.514 kb on + strand, within OKFHMN_04370 at 699.577 kb on + strand, within OKFHMN_04370 at 699.651 kb on + strand, within OKFHMN_04370 at 699.723 kb on - strand at 699.793 kb on - strand at 699.856 kb on - strand at 699.979 kb on - strand at 700.404 kb on - strand, within OKFHMN_04375
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 697,102 - +0.6 697,361 - OKFHMN_04365 0.85 +0.1 697,488 + +1.7 697,564 + -1.8 697,613 + -0.7 697,730 - +0.1 697,737 + +0.1 697,812 - OKFHMN_04370 0.11 -1.8 698,117 + OKFHMN_04370 0.23 -0.2 698,198 - OKFHMN_04370 0.27 -0.4 698,202 - OKFHMN_04370 0.27 +0.8 698,427 - OKFHMN_04370 0.37 -1.8 698,529 - OKFHMN_04370 0.41 +2.2 698,564 + OKFHMN_04370 0.42 -0.0 698,742 + OKFHMN_04370 0.50 -2.3 698,834 + OKFHMN_04370 0.54 -0.2 698,855 - OKFHMN_04370 0.55 +0.0 699,066 - OKFHMN_04370 0.64 -1.0 699,280 + OKFHMN_04370 0.73 -1.0 699,318 - OKFHMN_04370 0.74 -0.5 699,319 + OKFHMN_04370 0.74 -1.5 699,324 - OKFHMN_04370 0.75 +0.1 699,324 - OKFHMN_04370 0.75 +0.4 699,514 + OKFHMN_04370 0.83 +0.9 699,577 + OKFHMN_04370 0.85 +0.1 699,651 + OKFHMN_04370 0.88 -0.7 699,723 - -2.1 699,793 - -0.1 699,856 - -0.1 699,979 - -2.0 700,404 - OKFHMN_04375 0.58 +2.5
Or see this region's nucleotide sequence