Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04310

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntureD1 and OKFHMN_04305 are separated by 380 nucleotidesOKFHMN_04305 and opgE are separated by 224 nucleotidesopgE and dgkA are separated by 92 nucleotides OKFHMN_04300: ureD1 - Putative urease accessory UreD-like protein, at 686,235 to 686,933 ureD1 OKFHMN_04305: OKFHMN_04305 - hypothetical protein, at 687,314 to 687,589 _04305 OKFHMN_04310: opgE - phosphoethanolamine transferase, at 687,814 to 689,433 opgE OKFHMN_04315: dgkA - Diacylglycerol kinase, at 689,526 to 689,885 dgkA Position (kb) 687 688 689 690Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 687.038 kb on - strandat 687.080 kb on - strandat 687.125 kb on + strandat 687.126 kb on - strandat 687.236 kb on + strandat 687.266 kb on + strandat 687.434 kb on - strand, within OKFHMN_04305at 688.798 kb on - strand, within opgEat 690.255 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
687,038 - +0.2
687,080 - +1.2
687,125 + -0.0
687,126 - -0.0
687,236 + -4.4
687,266 + +0.6
687,434 - OKFHMN_04305 0.43 +0.1
688,798 - opgE OKFHMN_04310 0.61 -2.7
690,255 - -0.1

Or see this region's nucleotide sequence