Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04255 and OKFHMN_04260 are separated by 61 nucleotides OKFHMN_04260 and ureG are separated by 255 nucleotides ureG and ureF are separated by 11 nucleotides ureF and ureE are separated by 0 nucleotides
OKFHMN_04255: OKFHMN_04255 - complement resistance protein TraT, at 681,252 to 681,380
_04255
OKFHMN_04260: OKFHMN_04260 - Transposase, at 681,442 to 681,783
_04260
OKFHMN_04265: ureG - urease accessory protein UreG, at 682,039 to 682,656
ureG
OKFHMN_04270: ureF - Urease accessory protein UreF, at 682,668 to 683,342
ureF
OKFHMN_04275: ureE - urease accessory protein UreE, at 683,343 to 683,807
ureE
Position (kb) 682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.068 kb on - strand at 681.069 kb on + strand at 681.437 kb on + strand at 681.859 kb on + strand at 681.859 kb on + strand at 681.859 kb on + strand at 681.859 kb on + strand at 681.992 kb on + strand at 682.023 kb on - strand at 682.023 kb on - strand at 682.044 kb on + strand at 682.145 kb on - strand, within ureG at 682.280 kb on - strand, within ureG at 682.280 kb on - strand, within ureG at 682.280 kb on - strand, within ureG at 682.286 kb on + strand, within ureG at 682.287 kb on - strand, within ureG at 682.287 kb on - strand, within ureG at 682.289 kb on - strand, within ureG at 682.289 kb on - strand, within ureG at 682.649 kb on - strand at 682.718 kb on + strand at 682.719 kb on - strand at 682.808 kb on + strand, within ureF at 682.809 kb on - strand, within ureF at 682.812 kb on + strand, within ureF at 682.972 kb on - strand, within ureF at 683.486 kb on - strand, within ureE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 681,068 - -0.7 681,069 + -1.3 681,437 + -0.8 681,859 + +0.6 681,859 + +0.1 681,859 + +0.6 681,859 + +0.8 681,992 + +0.4 682,023 - +0.4 682,023 - +2.3 682,044 + -2.0 682,145 - ureG OKFHMN_04265 0.17 +0.7 682,280 - ureG OKFHMN_04265 0.39 -1.3 682,280 - ureG OKFHMN_04265 0.39 -0.3 682,280 - ureG OKFHMN_04265 0.39 +0.7 682,286 + ureG OKFHMN_04265 0.40 +1.4 682,287 - ureG OKFHMN_04265 0.40 +0.6 682,287 - ureG OKFHMN_04265 0.40 -0.7 682,289 - ureG OKFHMN_04265 0.40 +0.2 682,289 - ureG OKFHMN_04265 0.40 +0.2 682,649 - -1.2 682,718 + -0.7 682,719 - -0.2 682,808 + ureF OKFHMN_04270 0.21 -1.1 682,809 - ureF OKFHMN_04270 0.21 +0.4 682,812 + ureF OKFHMN_04270 0.21 -0.1 682,972 - ureF OKFHMN_04270 0.45 +0.2 683,486 - ureE OKFHMN_04275 0.31 -0.2
Or see this region's nucleotide sequence