Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxL and mdtG are separated by 426 nucleotides mdtG and msyB are separated by 82 nucleotides msyB and yceK are separated by 0 nucleotides yceK and mdoH are separated by 172 nucleotides
OKFHMN_03770: lpxL - kdo(2)-lipid IV(A) lauroyltransferase, at 600,384 to 601,304
lpxL
OKFHMN_03775: mdtG - multidrug efflux MFS transporter MdtG, at 601,731 to 602,702
mdtG
OKFHMN_03780: msyB - MysB family protein, at 602,785 to 603,159
msyB
OKFHMN_03785: yceK - YceK/YidQ family lipoprotein, at 603,160 to 603,387
yceK
OKFHMN_03795: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 603,560 to 606,073
mdoH
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1 at 601.302 kb on + strand at 601.302 kb on + strand at 601.438 kb on + strand at 601.584 kb on + strand at 601.635 kb on - strand at 601.662 kb on - strand at 602.249 kb on + strand, within mdtG at 602.282 kb on - strand, within mdtG at 602.547 kb on - strand, within mdtG at 602.717 kb on + strand at 602.976 kb on - strand, within msyB at 603.032 kb on + strand, within msyB at 603.063 kb on + strand, within msyB at 603.069 kb on - strand, within msyB at 603.157 kb on + strand at 603.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 601,302 + +1.0 601,302 + +0.9 601,438 + -0.4 601,584 + -0.2 601,635 - +0.8 601,662 - -1.6 602,249 + mdtG OKFHMN_03775 0.53 -1.0 602,282 - mdtG OKFHMN_03775 0.57 +1.2 602,547 - mdtG OKFHMN_03775 0.84 -0.1 602,717 + -1.3 602,976 - msyB OKFHMN_03780 0.51 +0.7 603,032 + msyB OKFHMN_03780 0.66 -1.8 603,063 + msyB OKFHMN_03780 0.74 -2.3 603,069 - msyB OKFHMN_03780 0.76 +0.8 603,157 + -0.6 603,619 - +0.1
Or see this region's nucleotide sequence