Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt grxB and yceB are separated by 133 nucleotides yceB and pyrC are separated by 105 nucleotides pyrC and dinI are separated by 73 nucleotides dinI and bssS are separated by 289 nucleotides bssS and solA are separated by 114 nucleotides
OKFHMN_03720: grxB - glutaredoxin 2, at 592,909 to 593,556
grxB
OKFHMN_03725: yceB - lipoprotein, at 593,690 to 594,250
yceB
OKFHMN_03730: pyrC - dihydroorotase, at 594,356 to 595,402
pyrC
OKFHMN_03735: dinI - DNA damage-inducible protein I, at 595,476 to 595,721
dinI
OKFHMN_03740: bssS - biofilm formation regulator BssS, at 596,011 to 596,265
bssS
OKFHMN_03745: solA - N-methyl-L-tryptophan oxidase, at 596,380 to 597,498
solA
Position (kb) 594
595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 593.361 kb on - strand, within grxB at 593.432 kb on + strand, within grxB at 593.473 kb on - strand, within grxB at 593.807 kb on - strand, within yceB at 593.807 kb on - strand, within yceB at 593.854 kb on + strand, within yceB at 594.057 kb on + strand, within yceB at 594.057 kb on + strand, within yceB at 594.058 kb on - strand, within yceB at 594.125 kb on + strand, within yceB at 594.354 kb on + strand at 594.449 kb on + strand at 594.541 kb on + strand, within pyrC at 594.638 kb on - strand, within pyrC at 595.017 kb on - strand, within pyrC at 595.190 kb on + strand, within pyrC at 595.426 kb on + strand at 595.475 kb on + strand at 595.723 kb on - strand at 595.823 kb on + strand at 595.824 kb on - strand at 595.934 kb on + strand at 596.076 kb on + strand, within bssS at 596.325 kb on + strand at 596.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 593,361 - grxB OKFHMN_03720 0.70 +0.3 593,432 + grxB OKFHMN_03720 0.81 +0.1 593,473 - grxB OKFHMN_03720 0.87 +1.3 593,807 - yceB OKFHMN_03725 0.21 -1.5 593,807 - yceB OKFHMN_03725 0.21 +1.6 593,854 + yceB OKFHMN_03725 0.29 +0.3 594,057 + yceB OKFHMN_03725 0.65 +0.7 594,057 + yceB OKFHMN_03725 0.65 -1.5 594,058 - yceB OKFHMN_03725 0.66 +0.3 594,125 + yceB OKFHMN_03725 0.78 -0.6 594,354 + -4.6 594,449 + -3.1 594,541 + pyrC OKFHMN_03730 0.18 -3.9 594,638 - pyrC OKFHMN_03730 0.27 -1.8 595,017 - pyrC OKFHMN_03730 0.63 -3.3 595,190 + pyrC OKFHMN_03730 0.80 -3.9 595,426 + +0.6 595,475 + -0.6 595,723 - -3.4 595,823 + +1.1 595,824 - -1.6 595,934 + -2.1 596,076 + bssS OKFHMN_03740 0.25 -0.4 596,325 + -1.7 596,326 - -1.9
Or see this region's nucleotide sequence