Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03635

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgK and flgJ are separated by 65 nucleotidesflgJ and flgI overlap by 1 nucleotides OKFHMN_03630: flgK - flagellar hook-associated protein FlgK, at 576,979 to 578,622 flgK OKFHMN_03635: flgJ - flagellar assembly peptidoglycan hydrolase FlgJ, at 578,688 to 579,629 flgJ OKFHMN_03640: flgI - flagellar basal body P-ring protein FlgI, at 579,629 to 580,726 flgI Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1at 577.735 kb on - strand, within flgKat 577.802 kb on - strand, within flgKat 577.950 kb on - strand, within flgKat 578.332 kb on - strand, within flgKat 578.448 kb on - strand, within flgKat 578.536 kb on - strandat 578.634 kb on - strandat 579.409 kb on + strand, within flgJat 579.409 kb on + strand, within flgJat 579.410 kb on - strand, within flgJat 580.004 kb on - strand, within flgI

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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577,735 - flgK OKFHMN_03630 0.46 +1.0
577,802 - flgK OKFHMN_03630 0.50 -0.5
577,950 - flgK OKFHMN_03630 0.59 +0.5
578,332 - flgK OKFHMN_03630 0.82 -0.9
578,448 - flgK OKFHMN_03630 0.89 -0.8
578,536 - +0.7
578,634 - -3.1
579,409 + flgJ OKFHMN_03635 0.77 -2.6
579,409 + flgJ OKFHMN_03635 0.77 -0.2
579,410 - flgJ OKFHMN_03635 0.77 -1.2
580,004 - flgI OKFHMN_03640 0.34 +0.8

Or see this region's nucleotide sequence