Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt comR and ycfJ are separated by 61 nucleotides ycfJ and ndh are separated by 226 nucleotides ndh and ycfP are separated by 399 nucleotides ycfP and nagZ are separated by 22 nucleotides
OKFHMN_03485: comR - TetR family copper-responsive transcriptional repressor ComR, at 548,094 to 548,789
comR
OKFHMN_03490: ycfJ - Uncharacterized protein YcfJ, at 548,851 to 549,390
ycfJ
OKFHMN_03495: ndh - NADH-quinone dehydrogenase, at 549,617 to 550,921
ndh
OKFHMN_03500: ycfP - alpha/beta hydrolase YcfP, at 551,321 to 551,863
ycfP
OKFHMN_03505: nagZ - beta-N-acetylhexosaminidase, at 551,886 to 552,911
nagZ
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.684 kb on + strand, within comR at 548.787 kb on + strand at 548.887 kb on - strand at 548.966 kb on + strand, within ycfJ at 548.993 kb on + strand, within ycfJ at 549.491 kb on + strand at 549.544 kb on - strand at 549.610 kb on - strand at 549.655 kb on + strand at 549.656 kb on - strand at 549.674 kb on + strand at 549.731 kb on - strand at 549.732 kb on + strand at 549.733 kb on - strand at 549.733 kb on - strand at 549.735 kb on - strand at 549.735 kb on - strand at 549.735 kb on - strand at 549.735 kb on - strand at 549.991 kb on - strand, within ndh at 549.991 kb on - strand, within ndh at 550.052 kb on - strand, within ndh at 550.129 kb on + strand, within ndh at 550.240 kb on + strand, within ndh at 550.241 kb on - strand, within ndh at 550.280 kb on + strand, within ndh at 550.327 kb on - strand, within ndh at 550.440 kb on + strand, within ndh at 550.441 kb on - strand, within ndh at 550.531 kb on + strand, within ndh at 550.636 kb on + strand, within ndh at 550.995 kb on - strand at 551.027 kb on + strand at 551.065 kb on + strand at 551.178 kb on + strand at 551.178 kb on + strand at 551.182 kb on + strand at 551.194 kb on + strand at 551.195 kb on - strand at 551.416 kb on - strand, within ycfP at 551.524 kb on + strand, within ycfP at 551.525 kb on - strand, within ycfP at 551.763 kb on + strand, within ycfP at 551.769 kb on - strand, within ycfP at 551.769 kb on - strand, within ycfP at 551.778 kb on - strand, within ycfP at 551.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 548,684 + comR OKFHMN_03485 0.85 +0.2 548,787 + -0.8 548,887 - -0.5 548,966 + ycfJ OKFHMN_03490 0.21 +0.1 548,993 + ycfJ OKFHMN_03490 0.26 -0.1 549,491 + -2.8 549,544 - +0.6 549,610 - -0.8 549,655 + +1.2 549,656 - -0.6 549,674 + -0.1 549,731 - -0.1 549,732 + -0.7 549,733 - -0.3 549,733 - -2.3 549,735 - -3.0 549,735 - +0.3 549,735 - -2.0 549,735 - -0.7 549,991 - ndh OKFHMN_03495 0.29 +0.4 549,991 - ndh OKFHMN_03495 0.29 -0.0 550,052 - ndh OKFHMN_03495 0.33 +1.2 550,129 + ndh OKFHMN_03495 0.39 +0.5 550,240 + ndh OKFHMN_03495 0.48 +1.4 550,241 - ndh OKFHMN_03495 0.48 +0.9 550,280 + ndh OKFHMN_03495 0.51 +0.5 550,327 - ndh OKFHMN_03495 0.54 -1.2 550,440 + ndh OKFHMN_03495 0.63 +0.7 550,441 - ndh OKFHMN_03495 0.63 -1.0 550,531 + ndh OKFHMN_03495 0.70 +0.9 550,636 + ndh OKFHMN_03495 0.78 +2.3 550,995 - -0.5 551,027 + +2.1 551,065 + -0.6 551,178 + +0.6 551,178 + +0.3 551,182 + -1.5 551,194 + -1.3 551,195 - -1.8 551,416 - ycfP OKFHMN_03500 0.17 +0.3 551,524 + ycfP OKFHMN_03500 0.37 +0.6 551,525 - ycfP OKFHMN_03500 0.38 +1.0 551,763 + ycfP OKFHMN_03500 0.81 -0.1 551,769 - ycfP OKFHMN_03500 0.83 +0.4 551,769 - ycfP OKFHMN_03500 0.83 +0.1 551,778 - ycfP OKFHMN_03500 0.84 +0.7 551,834 - +0.2
Or see this region's nucleotide sequence