Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eCs1768 and OKFHMN_03390 are separated by 68 nucleotides OKFHMN_03390 and ydaS overlap by 17 nucleotides ydaS and OKFHMN_03400 are separated by 124 nucleotides OKFHMN_03400 and OKFHMN_03405 are separated by 237 nucleotides
OKFHMN_03385: eCs1768 - phage replisome organizer, at 529,010 to 530,047
eCs1768
OKFHMN_03390: OKFHMN_03390 - Rha family transcriptional regulator, at 530,116 to 530,541
_03390
OKFHMN_03395: ydaS - transcriptional regulator, at 530,525 to 530,848
ydaS
OKFHMN_03400: OKFHMN_03400 - Prophage repressor RacR, at 530,973 to 531,449
_03400
OKFHMN_03405: OKFHMN_03405 - DUF1391 domain-containing protein, at 531,687 to 531,917
_03405
Position (kb) 530
531 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 530.606 kb on - strand, within ydaS at 530.733 kb on - strand, within ydaS at 530.754 kb on - strand, within ydaS at 530.775 kb on - strand, within ydaS at 530.833 kb on - strand at 531.453 kb on + strand at 531.453 kb on + strand at 531.453 kb on + strand at 531.500 kb on + strand at 531.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 530,606 - ydaS OKFHMN_03395 0.25 -2.0 530,733 - ydaS OKFHMN_03395 0.64 -5.1 530,754 - ydaS OKFHMN_03395 0.71 -3.6 530,775 - ydaS OKFHMN_03395 0.77 -0.1 530,833 - -0.1 531,453 + +0.9 531,453 + -1.6 531,453 + -2.2 531,500 + -1.0 531,630 - +0.5
Or see this region's nucleotide sequence