Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02520

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciW and rnb are separated by 67 nucleotidesrnb and pdeR are separated by 234 nucleotides OKFHMN_02515: yciW - Uncharacterized protein YciW, at 394,103 to 395,230 yciW OKFHMN_02520: rnb - exoribonuclease II, at 395,298 to 397,232 rnb OKFHMN_02525: pdeR - cyclic di-GMP phosphodiesterase, at 397,467 to 399,452 pdeR Position (kb) 395 396 397 398Strain fitness (log2 ratio) -1 0 1at 394.412 kb on + strand, within yciWat 394.415 kb on + strand, within yciWat 394.430 kb on - strand, within yciWat 394.494 kb on - strand, within yciWat 394.749 kb on - strand, within yciWat 394.880 kb on - strand, within yciWat 395.159 kb on - strandat 395.193 kb on + strandat 395.274 kb on + strandat 395.746 kb on - strand, within rnbat 396.534 kb on + strand, within rnbat 396.535 kb on - strand, within rnbat 396.771 kb on + strand, within rnbat 397.230 kb on + strandat 398.211 kb on - strand, within pdeR

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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394,412 + yciW OKFHMN_02515 0.27 +0.5
394,415 + yciW OKFHMN_02515 0.28 -0.3
394,430 - yciW OKFHMN_02515 0.29 -0.8
394,494 - yciW OKFHMN_02515 0.35 +0.0
394,749 - yciW OKFHMN_02515 0.57 +1.7
394,880 - yciW OKFHMN_02515 0.69 +0.5
395,159 - -0.3
395,193 + -0.3
395,274 + +0.9
395,746 - rnb OKFHMN_02520 0.23 +0.4
396,534 + rnb OKFHMN_02520 0.64 -0.5
396,535 - rnb OKFHMN_02520 0.64 -0.5
396,771 + rnb OKFHMN_02520 0.76 -1.2
397,230 + +0.4
398,211 - pdeR OKFHMN_02525 0.37 +0.5

Or see this region's nucleotide sequence