Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjQ and ycjP are separated by 30 nucleotides ycjP and ugpA overlap by 14 nucleotides ugpA and OKFHMN_02370 are separated by 20 nucleotides OKFHMN_02370 and ycjN are separated by 48 nucleotides
OKFHMN_02355: ycjQ - D-guloside 3-dehydrogenase, at 361,086 to 362,138
ycjQ
OKFHMN_02360: ycjP - Inner membrane ABC transporter permease protein YcjP, at 362,169 to 363,011
ycjP
OKFHMN_02365: ugpA - sugar ABC transporter permease, at 362,998 to 363,879
ugpA
OKFHMN_02370: OKFHMN_02370 - ABC transporter substrate-binding protein, at 363,900 to 364,514
_02370
OKFHMN_02375: ycjN - Putative ABC transporter periplasmic-binding protein YcjN, at 364,563 to 365,192
ycjN
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1 at 362.228 kb on - strand at 362.232 kb on - strand at 362.288 kb on - strand, within ycjP at 362.453 kb on + strand, within ycjP at 362.658 kb on - strand, within ycjP at 362.660 kb on - strand, within ycjP at 363.694 kb on - strand, within ugpA at 363.701 kb on + strand, within ugpA at 363.902 kb on - strand at 364.310 kb on - strand, within OKFHMN_02370 at 364.388 kb on + strand, within OKFHMN_02370 at 364.389 kb on - strand, within OKFHMN_02370 at 364.390 kb on + strand, within OKFHMN_02370 at 364.391 kb on - strand, within OKFHMN_02370
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 362,228 - +0.3 362,232 - -0.2 362,288 - ycjP OKFHMN_02360 0.14 -0.9 362,453 + ycjP OKFHMN_02360 0.34 +1.4 362,658 - ycjP OKFHMN_02360 0.58 +0.7 362,660 - ycjP OKFHMN_02360 0.58 -2.3 363,694 - ugpA OKFHMN_02365 0.79 -0.9 363,701 + ugpA OKFHMN_02365 0.80 -2.1 363,902 - +0.7 364,310 - OKFHMN_02370 0.67 -0.8 364,388 + OKFHMN_02370 0.79 -1.5 364,389 - OKFHMN_02370 0.80 -0.6 364,390 + OKFHMN_02370 0.80 -0.5 364,391 - OKFHMN_02370 0.80 -0.1
Or see this region's nucleotide sequence