Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslJ and ydbJ overlap by 4 nucleotides ydbJ and nifJ are separated by 273 nucleotides nifJ and OKFHMN_01820 are separated by 365 nucleotides OKFHMN_01820 and OKFHMN_01825 overlap by 26 nucleotides
OKFHMN_01800: hslJ - heat shock protein HslJ, at 271,665 to 272,087
hslJ
OKFHMN_01805: ydbJ - Uncharacterized protein YdbJ, at 272,084 to 272,350
ydbJ
OKFHMN_01810: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 272,624 to 276,148
nifJ
OKFHMN_01820: OKFHMN_01820 - Putative outer membrane protein, at 276,514 to 276,885
_01820
OKFHMN_01825: OKFHMN_01825 - hypothetical protein, at 276,860 to 277,627
_01825
Position (kb) 272
273
274
275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 271.753 kb on + strand, within hslJ at 271.959 kb on - strand, within hslJ at 272.064 kb on - strand at 272.262 kb on - strand, within ydbJ at 272.395 kb on - strand at 272.612 kb on + strand at 272.624 kb on - strand at 272.943 kb on + strand at 274.169 kb on + strand, within nifJ at 274.252 kb on + strand, within nifJ at 274.829 kb on + strand, within nifJ at 275.730 kb on - strand, within nifJ at 277.145 kb on + strand, within OKFHMN_01825
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 271,753 + hslJ OKFHMN_01800 0.21 +0.8 271,959 - hslJ OKFHMN_01800 0.70 +0.5 272,064 - -0.1 272,262 - ydbJ OKFHMN_01805 0.67 -2.2 272,395 - -2.9 272,612 + -0.3 272,624 - +0.1 272,943 + -0.7 274,169 + nifJ OKFHMN_01810 0.44 +0.2 274,252 + nifJ OKFHMN_01810 0.46 +0.9 274,829 + nifJ OKFHMN_01810 0.63 +0.6 275,730 - nifJ OKFHMN_01810 0.88 -0.1 277,145 + OKFHMN_01825 0.37 -2.5
Or see this region's nucleotide sequence