Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01390

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnG and yddG are separated by 288 nucleotidesyddG and ompC2 are separated by 258 nucleotides OKFHMN_01385: fdnG - formate dehydrogenase-N subunit alpha, at 179,187 to 182,234 fdnG OKFHMN_01390: yddG - aromatic amino acid efflux DMT transporter YddG, at 182,523 to 183,347 yddG OKFHMN_01395: ompC2 - Outer membrane porin C 2, at 183,606 to 184,706 ompC2 Position (kb) 182 183 184Strain fitness (log2 ratio) -1 0 1at 182.051 kb on - strandat 182.081 kb on - strandat 182.258 kb on - strandat 182.361 kb on - strandat 182.655 kb on + strand, within yddGat 182.763 kb on + strand, within yddGat 183.350 kb on + strandat 184.045 kb on - strand, within ompC2

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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182,051 - -0.3
182,081 - +0.4
182,258 - +0.0
182,361 - +0.5
182,655 + yddG OKFHMN_01390 0.16 -0.2
182,763 + yddG OKFHMN_01390 0.29 -0.5
183,350 + +0.2
184,045 - ompC2 OKFHMN_01395 0.40 +0.7

Or see this region's nucleotide sequence