Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01385

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnI and fdnH overlap by 8 nucleotidesfdnH and fdnG are separated by 12 nucleotidesfdnG and yddG are separated by 288 nucleotides OKFHMN_01375: fdnI - formate dehydrogenase-N subunit gamma, at 177,644 to 178,297 fdnI OKFHMN_01380: fdnH - formate dehydrogenase N subunit beta, at 178,290 to 179,174 fdnH OKFHMN_01385: fdnG - formate dehydrogenase-N subunit alpha, at 179,187 to 182,234 fdnG OKFHMN_01390: yddG - aromatic amino acid efflux DMT transporter YddG, at 182,523 to 183,347 yddG Position (kb) 179 180 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1at 178.292 kb on - strandat 178.499 kb on - strand, within fdnHat 179.275 kb on - strandat 179.277 kb on - strandat 179.946 kb on - strand, within fdnGat 180.111 kb on - strand, within fdnGat 180.111 kb on - strand, within fdnGat 180.156 kb on + strand, within fdnGat 180.191 kb on - strand, within fdnGat 180.266 kb on - strand, within fdnGat 180.269 kb on + strand, within fdnGat 180.360 kb on - strand, within fdnGat 180.465 kb on - strand, within fdnGat 180.631 kb on + strand, within fdnGat 180.746 kb on - strand, within fdnGat 180.966 kb on - strand, within fdnGat 181.217 kb on - strand, within fdnGat 182.051 kb on - strandat 182.081 kb on - strandat 182.258 kb on - strandat 182.361 kb on - strandat 182.655 kb on + strand, within yddGat 182.763 kb on + strand, within yddG

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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178,292 - -0.6
178,499 - fdnH OKFHMN_01380 0.24 +1.6
179,275 - -1.1
179,277 - -0.7
179,946 - fdnG OKFHMN_01385 0.25 +0.5
180,111 - fdnG OKFHMN_01385 0.30 -0.4
180,111 - fdnG OKFHMN_01385 0.30 -1.0
180,156 + fdnG OKFHMN_01385 0.32 +0.2
180,191 - fdnG OKFHMN_01385 0.33 -3.3
180,266 - fdnG OKFHMN_01385 0.35 +0.9
180,269 + fdnG OKFHMN_01385 0.35 -0.6
180,360 - fdnG OKFHMN_01385 0.38 -1.2
180,465 - fdnG OKFHMN_01385 0.42 -2.8
180,631 + fdnG OKFHMN_01385 0.47 -2.3
180,746 - fdnG OKFHMN_01385 0.51 +0.1
180,966 - fdnG OKFHMN_01385 0.58 -1.4
181,217 - fdnG OKFHMN_01385 0.67 +0.1
182,051 - -0.3
182,081 - +0.4
182,258 - +0.0
182,361 - +0.5
182,655 + yddG OKFHMN_01390 0.16 -0.2
182,763 + yddG OKFHMN_01390 0.29 -0.5

Or see this region's nucleotide sequence