Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmC and bdm are separated by 344 nucleotides bdm and sra are separated by 101 nucleotides sra and maeA are separated by 156 nucleotides maeA and adhP are separated by 133 nucleotides
OKFHMN_01345: osmC - peroxiredoxin OsmC, at 172,758 to 173,189
osmC
OKFHMN_01350: bdm - biofilm-dependent modulation protein, at 173,534 to 173,749
bdm
OKFHMN_01355: sra - stationary-phase-induced ribosome-associated protein, at 173,851 to 173,988
sra
OKFHMN_01360: maeA - malate dehydrogenase, at 174,145 to 175,842
maeA
OKFHMN_01365: adhP - alcohol dehydrogenase AdhP, at 175,976 to 176,986
adhP
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1 at 173.384 kb on + strand at 173.479 kb on + strand at 173.773 kb on + strand at 173.922 kb on + strand, within sra at 173.923 kb on - strand, within sra at 174.063 kb on - strand at 174.063 kb on - strand at 174.064 kb on + strand at 174.450 kb on + strand, within maeA at 175.667 kb on + strand, within maeA at 175.975 kb on + strand at 175.976 kb on - strand at 176.082 kb on + strand, within adhP at 176.677 kb on - strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 173,384 + -2.4 173,479 + +1.0 173,773 + -1.2 173,922 + sra OKFHMN_01355 0.51 -0.4 173,923 - sra OKFHMN_01355 0.52 +0.1 174,063 - -1.2 174,063 - -0.2 174,064 + +0.1 174,450 + maeA OKFHMN_01360 0.18 +0.1 175,667 + maeA OKFHMN_01360 0.90 -2.1 175,975 + -0.2 175,976 - -0.2 176,082 + adhP OKFHMN_01365 0.10 -0.2 176,677 - adhP OKFHMN_01365 0.69 -2.1
Or see this region's nucleotide sequence