Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01165

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlsrD and lsrC overlap by 1 nucleotideslsrC and lsrA overlap by 7 nucleotides OKFHMN_01160: lsrD - autoinducer 2 ABC transporter permease LsrD, at 119,645 to 120,637 lsrD OKFHMN_01165: lsrC - autoinducer 2 ABC transporter permease LsrC, at 120,637 to 121,665 lsrC OKFHMN_01170: lsrA - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 121,659 to 123,194 lsrA Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.739 kb on - strandat 120.091 kb on + strand, within lsrDat 120.122 kb on + strand, within lsrDat 120.310 kb on - strand, within lsrDat 121.479 kb on + strand, within lsrCat 121.543 kb on - strand, within lsrCat 121.544 kb on + strand, within lsrCat 121.575 kb on - strandat 121.710 kb on - strandat 121.721 kb on + strandat 121.722 kb on - strandat 122.601 kb on - strand, within lsrA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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119,739 - -1.8
120,091 + lsrD OKFHMN_01160 0.45 +1.1
120,122 + lsrD OKFHMN_01160 0.48 -0.2
120,310 - lsrD OKFHMN_01160 0.67 +1.0
121,479 + lsrC OKFHMN_01165 0.82 -0.3
121,543 - lsrC OKFHMN_01165 0.88 -3.5
121,544 + lsrC OKFHMN_01165 0.88 +0.5
121,575 - +0.4
121,710 - -2.4
121,721 + -3.0
121,722 - -0.2
122,601 - lsrA OKFHMN_01170 0.61 +0.4

Or see this region's nucleotide sequence