Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01135

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuxaB and yneE are separated by 196 nucleotidesyneE and tam are separated by 3 nucleotidestam and lsrG are separated by 56 nucleotides OKFHMN_01130: uxaB - tagaturonate reductase, at 114,014 to 115,465 uxaB OKFHMN_01135: yneE - UPF0187 protein YneE, at 115,662 to 116,576 yneE OKFHMN_01140: tam - trans-aconitate 2-methyltransferase, at 116,580 to 117,338 tam OKFHMN_01145: lsrG - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 117,395 to 117,685 lsrG Position (kb) 115 116 117Strain fitness (log2 ratio) -1 0 1 2at 115.329 kb on + strandat 115.496 kb on + strandat 116.226 kb on - strand, within yneEat 117.313 kb on + strandat 117.315 kb on + strandat 117.491 kb on - strand, within lsrG

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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115,329 + +0.3
115,496 + +1.8
116,226 - yneE OKFHMN_01135 0.62 -0.2
117,313 + -0.3
117,315 + -0.0
117,491 - lsrG OKFHMN_01145 0.33 +1.0

Or see this region's nucleotide sequence