Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00605

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_00595 and tnp-IS3 are separated by 161 nucleotidestnp-IS3 and OKFHMN_00605 are separated by 10 nucleotidesOKFHMN_00605 and OKFHMN_00610 are separated by 141 nucleotidesOKFHMN_00610 and espK are separated by 188 nucleotides OKFHMN_00595: OKFHMN_00595 - IS3 family transposase, at 26,750 to 27,655 _00595 OKFHMN_00600: tnp-IS3 - IS3 family transposase, at 27,817 to 27,978 tnp-IS3 OKFHMN_00605: OKFHMN_00605 - Mutator family transposase, at 27,989 to 28,288 _00605 OKFHMN_00610: OKFHMN_00610 - hypothetical protein, at 28,430 to 28,663 _00610 OKFHMN_00615: espK - type III secretion system effector EspK, at 28,852 to 30,213 espK Position (kb) 27 28 29Strain fitness (log2 ratio) -1 0 1 2at 28.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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28,864 - +2.2

Or see this region's nucleotide sequence