Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_00430 and finO are separated by 136 nucleotides finO and dAP2 are separated by 102 nucleotides dAP2 and traX are separated by 58 nucleotides traX and OKFHMN_00450 are separated by 19 nucleotides
OKFHMN_00430: OKFHMN_00430 - hypothetical protein, at 87,830 to 88,081
_00430
OKFHMN_00435: finO - Fertility inhibition protein, at 88,218 to 88,778
finO
OKFHMN_00440: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 88,881 to 89,741
dAP2
OKFHMN_00445: traX - conjugal transfer pilus acetylase TraX, at 89,800 to 90,546
traX
OKFHMN_00450: OKFHMN_00450 - TraI domain-containing protein, at 90,566 to 91,822
_00450
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.090 kb on - strand at 88.102 kb on + strand at 88.113 kb on + strand at 88.116 kb on + strand at 88.116 kb on + strand at 88.116 kb on + strand at 88.128 kb on + strand at 88.128 kb on + strand at 88.129 kb on - strand at 88.129 kb on - strand at 88.176 kb on - strand at 88.277 kb on + strand, within finO at 88.298 kb on - strand, within finO at 88.298 kb on - strand, within finO at 88.319 kb on + strand, within finO at 88.320 kb on - strand, within finO at 88.320 kb on - strand, within finO at 88.320 kb on - strand, within finO at 88.320 kb on - strand, within finO at 88.334 kb on - strand, within finO at 88.518 kb on + strand, within finO at 88.579 kb on + strand, within finO at 88.783 kb on - strand at 88.783 kb on - strand at 88.867 kb on - strand at 88.873 kb on - strand at 88.917 kb on + strand at 88.917 kb on + strand at 88.918 kb on - strand at 88.920 kb on + strand at 88.945 kb on + strand at 88.954 kb on + strand at 88.955 kb on - strand at 88.989 kb on - strand, within dAP2 at 88.992 kb on - strand, within dAP2 at 89.011 kb on + strand, within dAP2 at 89.012 kb on - strand, within dAP2 at 89.012 kb on - strand, within dAP2 at 89.013 kb on + strand, within dAP2 at 89.013 kb on + strand, within dAP2 at 89.013 kb on + strand, within dAP2 at 89.014 kb on - strand, within dAP2 at 89.014 kb on - strand, within dAP2 at 89.014 kb on - strand, within dAP2 at 89.014 kb on - strand, within dAP2 at 89.014 kb on - strand, within dAP2 at 89.014 kb on - strand, within dAP2 at 89.111 kb on - strand, within dAP2 at 89.143 kb on - strand, within dAP2 at 89.149 kb on - strand, within dAP2 at 89.212 kb on - strand, within dAP2 at 89.212 kb on - strand, within dAP2 at 89.212 kb on - strand, within dAP2 at 89.212 kb on - strand, within dAP2 at 89.456 kb on + strand, within dAP2 at 89.457 kb on - strand, within dAP2 at 89.493 kb on - strand, within dAP2 at 89.493 kb on - strand, within dAP2 at 89.496 kb on - strand, within dAP2 at 89.652 kb on + strand, within dAP2 at 89.652 kb on + strand, within dAP2 at 89.654 kb on - strand, within dAP2 at 89.658 kb on - strand at 89.674 kb on - strand at 89.674 kb on - strand at 89.675 kb on + strand at 89.676 kb on - strand at 89.746 kb on - strand at 89.755 kb on + strand at 89.756 kb on - strand at 89.756 kb on - strand at 89.764 kb on + strand at 89.764 kb on + strand at 89.770 kb on + strand at 89.770 kb on + strand at 89.840 kb on + strand at 89.840 kb on + strand at 89.840 kb on + strand at 89.841 kb on - strand at 89.938 kb on + strand, within traX at 89.939 kb on - strand, within traX at 89.967 kb on + strand, within traX at 89.968 kb on - strand, within traX at 89.968 kb on - strand, within traX at 89.968 kb on - strand, within traX at 89.968 kb on - strand, within traX at 90.036 kb on - strand, within traX at 90.135 kb on + strand, within traX at 90.136 kb on - strand, within traX at 90.136 kb on - strand, within traX at 90.202 kb on - strand, within traX at 90.213 kb on - strand, within traX at 90.213 kb on - strand, within traX at 90.233 kb on + strand, within traX at 90.234 kb on - strand, within traX at 90.234 kb on - strand, within traX at 90.236 kb on + strand, within traX at 90.237 kb on - strand, within traX at 90.237 kb on - strand, within traX at 90.295 kb on - strand, within traX at 90.295 kb on - strand, within traX at 90.413 kb on - strand, within traX at 90.516 kb on + strand at 90.516 kb on + strand at 90.517 kb on - strand at 90.565 kb on - strand at 90.565 kb on - strand at 90.610 kb on + strand at 90.701 kb on + strand, within OKFHMN_00450 at 90.701 kb on + strand, within OKFHMN_00450 at 90.701 kb on + strand, within OKFHMN_00450 at 90.702 kb on - strand, within OKFHMN_00450
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 88,090 - -3.0 88,102 + +0.2 88,113 + +0.4 88,116 + +0.0 88,116 + +0.7 88,116 + +0.3 88,128 + -0.4 88,128 + +1.9 88,129 - -1.4 88,129 - +0.4 88,176 - +0.3 88,277 + finO OKFHMN_00435 0.11 +1.3 88,298 - finO OKFHMN_00435 0.14 +1.9 88,298 - finO OKFHMN_00435 0.14 +0.5 88,319 + finO OKFHMN_00435 0.18 -0.9 88,320 - finO OKFHMN_00435 0.18 +0.3 88,320 - finO OKFHMN_00435 0.18 -0.6 88,320 - finO OKFHMN_00435 0.18 +0.4 88,320 - finO OKFHMN_00435 0.18 -1.4 88,334 - finO OKFHMN_00435 0.21 +0.1 88,518 + finO OKFHMN_00435 0.53 +0.2 88,579 + finO OKFHMN_00435 0.64 -0.2 88,783 - +1.0 88,783 - -1.0 88,867 - +0.7 88,873 - -0.8 88,917 + -0.1 88,917 + +1.0 88,918 - +1.1 88,920 + -0.7 88,945 + +0.3 88,954 + +0.7 88,955 - +0.1 88,989 - dAP2 OKFHMN_00440 0.13 -0.1 88,992 - dAP2 OKFHMN_00440 0.13 -3.2 89,011 + dAP2 OKFHMN_00440 0.15 +0.6 89,012 - dAP2 OKFHMN_00440 0.15 -2.0 89,012 - dAP2 OKFHMN_00440 0.15 -0.5 89,013 + dAP2 OKFHMN_00440 0.15 +0.4 89,013 + dAP2 OKFHMN_00440 0.15 +2.0 89,013 + dAP2 OKFHMN_00440 0.15 -1.1 89,014 - dAP2 OKFHMN_00440 0.15 +1.1 89,014 - dAP2 OKFHMN_00440 0.15 +0.2 89,014 - dAP2 OKFHMN_00440 0.15 +0.8 89,014 - dAP2 OKFHMN_00440 0.15 -0.7 89,014 - dAP2 OKFHMN_00440 0.15 -2.7 89,014 - dAP2 OKFHMN_00440 0.15 +0.2 89,111 - dAP2 OKFHMN_00440 0.27 +0.7 89,143 - dAP2 OKFHMN_00440 0.30 -1.2 89,149 - dAP2 OKFHMN_00440 0.31 +0.0 89,212 - dAP2 OKFHMN_00440 0.38 -0.2 89,212 - dAP2 OKFHMN_00440 0.38 -0.6 89,212 - dAP2 OKFHMN_00440 0.38 -0.2 89,212 - dAP2 OKFHMN_00440 0.38 -0.4 89,456 + dAP2 OKFHMN_00440 0.67 +0.3 89,457 - dAP2 OKFHMN_00440 0.67 -0.0 89,493 - dAP2 OKFHMN_00440 0.71 -0.0 89,493 - dAP2 OKFHMN_00440 0.71 +0.3 89,496 - dAP2 OKFHMN_00440 0.71 +0.3 89,652 + dAP2 OKFHMN_00440 0.90 -0.2 89,652 + dAP2 OKFHMN_00440 0.90 +1.8 89,654 - dAP2 OKFHMN_00440 0.90 +1.9 89,658 - -1.1 89,674 - +1.3 89,674 - +0.7 89,675 + -2.8 89,676 - -0.2 89,746 - -0.5 89,755 + -0.2 89,756 - +0.9 89,756 - +0.1 89,764 + -0.7 89,764 + +1.5 89,770 + +0.9 89,770 + -0.5 89,840 + +1.7 89,840 + +0.8 89,840 + -0.1 89,841 - -0.2 89,938 + traX OKFHMN_00445 0.18 -1.4 89,939 - traX OKFHMN_00445 0.19 +0.5 89,967 + traX OKFHMN_00445 0.22 -2.1 89,968 - traX OKFHMN_00445 0.22 +0.6 89,968 - traX OKFHMN_00445 0.22 +1.0 89,968 - traX OKFHMN_00445 0.22 -0.0 89,968 - traX OKFHMN_00445 0.22 +1.6 90,036 - traX OKFHMN_00445 0.32 -0.3 90,135 + traX OKFHMN_00445 0.45 +0.4 90,136 - traX OKFHMN_00445 0.45 -1.4 90,136 - traX OKFHMN_00445 0.45 +0.3 90,202 - traX OKFHMN_00445 0.54 +0.1 90,213 - traX OKFHMN_00445 0.55 +0.2 90,213 - traX OKFHMN_00445 0.55 +0.5 90,233 + traX OKFHMN_00445 0.58 +2.1 90,234 - traX OKFHMN_00445 0.58 +0.4 90,234 - traX OKFHMN_00445 0.58 +0.5 90,236 + traX OKFHMN_00445 0.58 -0.6 90,237 - traX OKFHMN_00445 0.59 -0.6 90,237 - traX OKFHMN_00445 0.59 +0.4 90,295 - traX OKFHMN_00445 0.66 -0.5 90,295 - traX OKFHMN_00445 0.66 +0.1 90,413 - traX OKFHMN_00445 0.82 -0.2 90,516 + -0.3 90,516 + -1.7 90,517 - -1.4 90,565 - +0.7 90,565 - -0.0 90,610 + +0.7 90,701 + OKFHMN_00450 0.11 +0.4 90,701 + OKFHMN_00450 0.11 +0.1 90,701 + OKFHMN_00450 0.11 -1.1 90,702 - OKFHMN_00450 0.11 -0.4
Or see this region's nucleotide sequence