Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspK and gspJ overlap by 4 nucleotides gspJ and gspI overlap by 4 nucleotides gspI and gspH overlap by 4 nucleotides gspH and gspG overlap by 4 nucleotides
OKFHMN_00250: gspK - type II secretion system minor pseudopilin GspK, at 52,066 to 53,043
gspK
OKFHMN_00255: gspJ - type II secretion system minor pseudopilin GspJ, at 53,040 to 53,639
gspJ
OKFHMN_00260: gspI - type II secretion system minor pseudopilin GspI, at 53,636 to 54,001
gspI
OKFHMN_00265: gspH - type II secretion system minor pseudopilin GspH, at 53,998 to 54,552
gspH
OKFHMN_00270: gspG - type II secretion system major pseudopilin GspG, at 54,549 to 54,983
gspG
Position (kb) 53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 52.095 kb on - strand at 52.095 kb on - strand at 52.138 kb on + strand at 52.139 kb on - strand at 52.139 kb on - strand at 52.180 kb on + strand, within gspK at 52.180 kb on + strand, within gspK at 52.181 kb on - strand, within gspK at 52.181 kb on - strand, within gspK at 52.248 kb on + strand, within gspK at 52.313 kb on - strand, within gspK at 52.313 kb on - strand, within gspK at 52.389 kb on + strand, within gspK at 52.390 kb on - strand, within gspK at 52.424 kb on - strand, within gspK at 52.433 kb on + strand, within gspK at 52.434 kb on - strand, within gspK at 52.434 kb on - strand, within gspK at 52.434 kb on - strand, within gspK at 52.465 kb on + strand, within gspK at 52.466 kb on - strand, within gspK at 52.466 kb on - strand, within gspK at 52.476 kb on + strand, within gspK at 52.476 kb on + strand, within gspK at 52.483 kb on + strand, within gspK at 52.524 kb on - strand, within gspK at 52.542 kb on + strand, within gspK at 52.543 kb on - strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.544 kb on + strand, within gspK at 52.545 kb on - strand, within gspK at 52.545 kb on - strand, within gspK at 52.545 kb on - strand, within gspK at 52.545 kb on - strand, within gspK at 52.545 kb on - strand, within gspK at 52.545 kb on - strand, within gspK at 52.545 kb on - strand, within gspK at 52.578 kb on + strand, within gspK at 52.578 kb on + strand, within gspK at 52.603 kb on + strand, within gspK at 52.630 kb on + strand, within gspK at 52.655 kb on - strand, within gspK at 52.657 kb on + strand, within gspK at 52.658 kb on - strand, within gspK at 52.658 kb on - strand, within gspK at 52.687 kb on + strand, within gspK at 52.687 kb on + strand, within gspK at 52.687 kb on + strand, within gspK at 52.687 kb on + strand, within gspK at 52.687 kb on + strand, within gspK at 52.687 kb on + strand, within gspK at 52.687 kb on + strand, within gspK at 52.688 kb on - strand, within gspK at 52.688 kb on - strand, within gspK at 52.689 kb on + strand, within gspK at 52.689 kb on + strand, within gspK at 52.690 kb on - strand, within gspK at 52.690 kb on - strand, within gspK at 52.690 kb on - strand, within gspK at 52.712 kb on + strand, within gspK at 52.717 kb on - strand, within gspK at 52.726 kb on - strand, within gspK at 52.726 kb on - strand, within gspK at 52.859 kb on - strand, within gspK at 52.874 kb on - strand, within gspK at 52.887 kb on + strand, within gspK at 52.889 kb on + strand, within gspK at 52.889 kb on + strand, within gspK at 52.890 kb on - strand, within gspK at 52.890 kb on - strand, within gspK at 52.932 kb on + strand, within gspK at 52.975 kb on + strand at 52.981 kb on + strand at 53.005 kb on + strand at 53.272 kb on - strand, within gspJ at 53.298 kb on + strand, within gspJ at 53.299 kb on - strand, within gspJ at 53.299 kb on - strand, within gspJ at 53.299 kb on - strand, within gspJ at 53.307 kb on + strand, within gspJ at 53.307 kb on + strand, within gspJ at 53.308 kb on - strand, within gspJ at 53.308 kb on - strand, within gspJ at 53.451 kb on - strand, within gspJ at 53.502 kb on + strand, within gspJ at 53.502 kb on + strand, within gspJ at 53.503 kb on - strand, within gspJ at 53.503 kb on - strand, within gspJ at 53.503 kb on - strand, within gspJ at 53.508 kb on - strand, within gspJ at 53.532 kb on + strand, within gspJ at 53.612 kb on + strand at 53.613 kb on - strand at 53.613 kb on - strand at 53.622 kb on + strand at 53.623 kb on - strand at 53.656 kb on + strand at 53.689 kb on + strand, within gspI at 53.699 kb on + strand, within gspI at 53.699 kb on + strand, within gspI at 53.699 kb on + strand, within gspI at 53.705 kb on + strand, within gspI at 53.706 kb on - strand, within gspI at 53.706 kb on - strand, within gspI at 53.756 kb on + strand, within gspI at 53.756 kb on + strand, within gspI at 53.757 kb on - strand, within gspI at 53.757 kb on - strand, within gspI at 53.960 kb on + strand, within gspI at 53.960 kb on + strand, within gspI at 53.961 kb on - strand, within gspI at 53.961 kb on - strand, within gspI at 53.961 kb on - strand, within gspI at 53.963 kb on + strand, within gspI at 53.964 kb on - strand, within gspI at 53.964 kb on - strand, within gspI at 53.964 kb on - strand, within gspI at 54.185 kb on + strand, within gspH at 54.263 kb on + strand, within gspH at 54.263 kb on + strand, within gspH at 54.264 kb on - strand, within gspH at 54.264 kb on - strand, within gspH at 54.264 kb on - strand, within gspH at 54.277 kb on - strand, within gspH at 54.293 kb on - strand, within gspH at 54.293 kb on - strand, within gspH at 54.333 kb on + strand, within gspH at 54.393 kb on + strand, within gspH at 54.393 kb on + strand, within gspH at 54.393 kb on + strand, within gspH at 54.394 kb on - strand, within gspH at 54.404 kb on + strand, within gspH at 54.405 kb on - strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.476 kb on - strand, within gspH at 54.476 kb on - strand, within gspH at 54.476 kb on - strand, within gspH at 54.479 kb on - strand, within gspH at 54.585 kb on - strand at 54.629 kb on + strand, within gspG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 52,095 - -0.2 52,095 - -0.5 52,138 + -0.5 52,139 - +0.4 52,139 - -0.1 52,180 + gspK OKFHMN_00250 0.12 +0.0 52,180 + gspK OKFHMN_00250 0.12 -0.9 52,181 - gspK OKFHMN_00250 0.12 +0.3 52,181 - gspK OKFHMN_00250 0.12 -0.3 52,248 + gspK OKFHMN_00250 0.19 +0.9 52,313 - gspK OKFHMN_00250 0.25 +0.1 52,313 - gspK OKFHMN_00250 0.25 -2.1 52,389 + gspK OKFHMN_00250 0.33 +0.8 52,390 - gspK OKFHMN_00250 0.33 +1.9 52,424 - gspK OKFHMN_00250 0.37 +1.0 52,433 + gspK OKFHMN_00250 0.38 +0.4 52,434 - gspK OKFHMN_00250 0.38 +0.6 52,434 - gspK OKFHMN_00250 0.38 -2.6 52,434 - gspK OKFHMN_00250 0.38 +1.6 52,465 + gspK OKFHMN_00250 0.41 -1.2 52,466 - gspK OKFHMN_00250 0.41 -1.8 52,466 - gspK OKFHMN_00250 0.41 +1.2 52,476 + gspK OKFHMN_00250 0.42 -1.1 52,476 + gspK OKFHMN_00250 0.42 +0.2 52,483 + gspK OKFHMN_00250 0.43 -0.9 52,524 - gspK OKFHMN_00250 0.47 -0.3 52,542 + gspK OKFHMN_00250 0.49 +0.8 52,543 - gspK OKFHMN_00250 0.49 -0.7 52,544 + gspK OKFHMN_00250 0.49 +0.5 52,544 + gspK OKFHMN_00250 0.49 -1.0 52,544 + gspK OKFHMN_00250 0.49 -0.4 52,544 + gspK OKFHMN_00250 0.49 -0.2 52,544 + gspK OKFHMN_00250 0.49 +0.9 52,544 + gspK OKFHMN_00250 0.49 -1.6 52,544 + gspK OKFHMN_00250 0.49 +0.0 52,544 + gspK OKFHMN_00250 0.49 +2.5 52,544 + gspK OKFHMN_00250 0.49 -0.2 52,544 + gspK OKFHMN_00250 0.49 +0.4 52,544 + gspK OKFHMN_00250 0.49 +0.9 52,545 - gspK OKFHMN_00250 0.49 -0.6 52,545 - gspK OKFHMN_00250 0.49 -0.1 52,545 - gspK OKFHMN_00250 0.49 -0.1 52,545 - gspK OKFHMN_00250 0.49 +0.3 52,545 - gspK OKFHMN_00250 0.49 -0.6 52,545 - gspK OKFHMN_00250 0.49 +0.1 52,545 - gspK OKFHMN_00250 0.49 +0.6 52,578 + gspK OKFHMN_00250 0.52 -0.2 52,578 + gspK OKFHMN_00250 0.52 -1.0 52,603 + gspK OKFHMN_00250 0.55 +0.4 52,630 + gspK OKFHMN_00250 0.58 +0.2 52,655 - gspK OKFHMN_00250 0.60 +0.0 52,657 + gspK OKFHMN_00250 0.60 -0.5 52,658 - gspK OKFHMN_00250 0.61 -2.9 52,658 - gspK OKFHMN_00250 0.61 +0.6 52,687 + gspK OKFHMN_00250 0.63 +1.3 52,687 + gspK OKFHMN_00250 0.63 +1.0 52,687 + gspK OKFHMN_00250 0.63 +0.2 52,687 + gspK OKFHMN_00250 0.63 -1.9 52,687 + gspK OKFHMN_00250 0.63 +0.3 52,687 + gspK OKFHMN_00250 0.63 +2.0 52,687 + gspK OKFHMN_00250 0.63 -0.3 52,688 - gspK OKFHMN_00250 0.64 -1.1 52,688 - gspK OKFHMN_00250 0.64 -0.6 52,689 + gspK OKFHMN_00250 0.64 -0.8 52,689 + gspK OKFHMN_00250 0.64 +1.2 52,690 - gspK OKFHMN_00250 0.64 +1.5 52,690 - gspK OKFHMN_00250 0.64 +0.2 52,690 - gspK OKFHMN_00250 0.64 -0.3 52,712 + gspK OKFHMN_00250 0.66 +0.5 52,717 - gspK OKFHMN_00250 0.67 -0.2 52,726 - gspK OKFHMN_00250 0.67 -0.4 52,726 - gspK OKFHMN_00250 0.67 +0.0 52,859 - gspK OKFHMN_00250 0.81 +0.2 52,874 - gspK OKFHMN_00250 0.83 -1.1 52,887 + gspK OKFHMN_00250 0.84 +0.3 52,889 + gspK OKFHMN_00250 0.84 +1.9 52,889 + gspK OKFHMN_00250 0.84 -0.2 52,890 - gspK OKFHMN_00250 0.84 -0.0 52,890 - gspK OKFHMN_00250 0.84 +1.0 52,932 + gspK OKFHMN_00250 0.89 -0.7 52,975 + -0.1 52,981 + -1.2 53,005 + +0.2 53,272 - gspJ OKFHMN_00255 0.39 +0.5 53,298 + gspJ OKFHMN_00255 0.43 +0.2 53,299 - gspJ OKFHMN_00255 0.43 +0.7 53,299 - gspJ OKFHMN_00255 0.43 -0.4 53,299 - gspJ OKFHMN_00255 0.43 -0.6 53,307 + gspJ OKFHMN_00255 0.45 -1.3 53,307 + gspJ OKFHMN_00255 0.45 -1.9 53,308 - gspJ OKFHMN_00255 0.45 +0.5 53,308 - gspJ OKFHMN_00255 0.45 -1.1 53,451 - gspJ OKFHMN_00255 0.69 +0.5 53,502 + gspJ OKFHMN_00255 0.77 +0.6 53,502 + gspJ OKFHMN_00255 0.77 +0.5 53,503 - gspJ OKFHMN_00255 0.77 +0.5 53,503 - gspJ OKFHMN_00255 0.77 -0.0 53,503 - gspJ OKFHMN_00255 0.77 -0.2 53,508 - gspJ OKFHMN_00255 0.78 +0.2 53,532 + gspJ OKFHMN_00255 0.82 +0.6 53,612 + -0.9 53,613 - -0.1 53,613 - +1.6 53,622 + -0.1 53,623 - +0.3 53,656 + -0.1 53,689 + gspI OKFHMN_00260 0.14 -0.6 53,699 + gspI OKFHMN_00260 0.17 +0.2 53,699 + gspI OKFHMN_00260 0.17 +0.3 53,699 + gspI OKFHMN_00260 0.17 +0.6 53,705 + gspI OKFHMN_00260 0.19 +0.5 53,706 - gspI OKFHMN_00260 0.19 +0.2 53,706 - gspI OKFHMN_00260 0.19 -0.2 53,756 + gspI OKFHMN_00260 0.33 +0.1 53,756 + gspI OKFHMN_00260 0.33 -2.4 53,757 - gspI OKFHMN_00260 0.33 +0.0 53,757 - gspI OKFHMN_00260 0.33 +0.0 53,960 + gspI OKFHMN_00260 0.89 -0.5 53,960 + gspI OKFHMN_00260 0.89 +0.0 53,961 - gspI OKFHMN_00260 0.89 -1.1 53,961 - gspI OKFHMN_00260 0.89 +0.3 53,961 - gspI OKFHMN_00260 0.89 +1.9 53,963 + gspI OKFHMN_00260 0.89 -0.6 53,964 - gspI OKFHMN_00260 0.90 +1.4 53,964 - gspI OKFHMN_00260 0.90 -1.3 53,964 - gspI OKFHMN_00260 0.90 -0.8 54,185 + gspH OKFHMN_00265 0.34 -0.4 54,263 + gspH OKFHMN_00265 0.48 -0.5 54,263 + gspH OKFHMN_00265 0.48 -0.4 54,264 - gspH OKFHMN_00265 0.48 -2.2 54,264 - gspH OKFHMN_00265 0.48 -3.1 54,264 - gspH OKFHMN_00265 0.48 +3.2 54,277 - gspH OKFHMN_00265 0.50 +0.5 54,293 - gspH OKFHMN_00265 0.53 -1.0 54,293 - gspH OKFHMN_00265 0.53 +0.2 54,333 + gspH OKFHMN_00265 0.60 +0.8 54,393 + gspH OKFHMN_00265 0.71 +0.7 54,393 + gspH OKFHMN_00265 0.71 +0.3 54,393 + gspH OKFHMN_00265 0.71 -2.3 54,394 - gspH OKFHMN_00265 0.71 +0.2 54,404 + gspH OKFHMN_00265 0.73 -0.5 54,405 - gspH OKFHMN_00265 0.73 -0.6 54,475 + gspH OKFHMN_00265 0.86 +1.1 54,475 + gspH OKFHMN_00265 0.86 -0.2 54,475 + gspH OKFHMN_00265 0.86 +1.2 54,475 + gspH OKFHMN_00265 0.86 +0.0 54,475 + gspH OKFHMN_00265 0.86 +0.4 54,475 + gspH OKFHMN_00265 0.86 +0.6 54,476 - gspH OKFHMN_00265 0.86 -1.2 54,476 - gspH OKFHMN_00265 0.86 +0.1 54,476 - gspH OKFHMN_00265 0.86 +0.1 54,479 - gspH OKFHMN_00265 0.87 -0.1 54,585 - +0.8 54,629 + gspG OKFHMN_00270 0.18 -1.1
Or see this region's nucleotide sequence