Experiment: Seed; RBT.2.2.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04642 and GEMAOFIL_04643 are separated by 67 nucleotides GEMAOFIL_04643 and GEMAOFIL_04644 are separated by 188 nucleotides GEMAOFIL_04644 and GEMAOFIL_04645 are separated by 137 nucleotides
GEMAOFIL_04642: GEMAOFIL_04642 - Holliday junction ATP-dependent DNA helicase RuvA, at 5,117,611 to 5,118,222
_04642
GEMAOFIL_04643: GEMAOFIL_04643 - Crossover junction endodeoxyribonuclease RuvC, at 5,118,290 to 5,118,814
_04643
GEMAOFIL_04644: GEMAOFIL_04644 - Transcriptional regulatory protein PmpR, at 5,119,003 to 5,119,749
_04644
GEMAOFIL_04645: GEMAOFIL_04645 - Aspartate--tRNA(Asp/Asn) ligase, at 5,119,887 to 5,121,662
_04645
Position (kb) 5119
5120 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5118.041 kb on + strand, within GEMAOFIL_04642 at 5118.041 kb on + strand, within GEMAOFIL_04642 at 5118.041 kb on + strand, within GEMAOFIL_04642 at 5118.117 kb on - strand, within GEMAOFIL_04642 at 5118.270 kb on + strand at 5118.270 kb on + strand at 5118.289 kb on - strand at 5118.640 kb on - strand, within GEMAOFIL_04643 at 5118.732 kb on + strand, within GEMAOFIL_04643 at 5118.796 kb on + strand at 5118.800 kb on + strand at 5118.801 kb on - strand at 5118.801 kb on - strand at 5118.801 kb on - strand at 5118.801 kb on - strand at 5118.807 kb on - strand at 5118.884 kb on - strand at 5118.897 kb on + strand at 5118.935 kb on + strand at 5118.935 kb on + strand at 5118.936 kb on - strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.951 kb on - strand at 5118.987 kb on + strand at 5118.988 kb on - strand at 5119.009 kb on + strand at 5119.060 kb on + strand at 5119.060 kb on + strand at 5119.060 kb on + strand at 5119.060 kb on + strand at 5119.060 kb on + strand at 5119.061 kb on - strand at 5119.084 kb on - strand, within GEMAOFIL_04644 at 5119.197 kb on + strand, within GEMAOFIL_04644 at 5119.197 kb on + strand, within GEMAOFIL_04644 at 5119.208 kb on + strand, within GEMAOFIL_04644 at 5119.209 kb on - strand, within GEMAOFIL_04644 at 5119.209 kb on - strand, within GEMAOFIL_04644 at 5119.227 kb on + strand, within GEMAOFIL_04644 at 5119.227 kb on + strand, within GEMAOFIL_04644 at 5119.228 kb on - strand, within GEMAOFIL_04644 at 5119.228 kb on - strand, within GEMAOFIL_04644 at 5119.228 kb on - strand, within GEMAOFIL_04644 at 5119.262 kb on - strand, within GEMAOFIL_04644 at 5119.262 kb on - strand, within GEMAOFIL_04644 at 5119.490 kb on + strand, within GEMAOFIL_04644 at 5119.490 kb on + strand, within GEMAOFIL_04644 at 5119.772 kb on - strand at 5119.780 kb on + strand at 5119.781 kb on - strand at 5119.814 kb on + strand at 5119.814 kb on + strand at 5119.815 kb on - strand at 5119.856 kb on - strand at 5119.863 kb on + strand at 5119.888 kb on + strand at 5119.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Seed; RBT.2.2.5 remove 5,118,041 + GEMAOFIL_04642 0.70 -0.9 5,118,041 + GEMAOFIL_04642 0.70 -0.7 5,118,041 + GEMAOFIL_04642 0.70 -1.3 5,118,117 - GEMAOFIL_04642 0.83 -1.6 5,118,270 + -0.0 5,118,270 + -1.9 5,118,289 - -1.6 5,118,640 - GEMAOFIL_04643 0.67 -0.5 5,118,732 + GEMAOFIL_04643 0.84 -0.4 5,118,796 + +0.9 5,118,800 + +1.2 5,118,801 - -0.0 5,118,801 - -1.3 5,118,801 - +0.5 5,118,801 - +1.0 5,118,807 - -0.1 5,118,884 - +2.7 5,118,897 + -1.8 5,118,935 + -1.3 5,118,935 + -1.3 5,118,936 - -0.6 5,118,950 + +0.4 5,118,950 + -1.0 5,118,951 - +0.0 5,118,987 + +0.1 5,118,988 - -0.2 5,119,009 + +0.6 5,119,060 + -0.3 5,119,060 + -0.3 5,119,060 + +0.2 5,119,060 + -0.0 5,119,060 + -0.6 5,119,061 - -0.2 5,119,084 - GEMAOFIL_04644 0.11 +0.8 5,119,197 + GEMAOFIL_04644 0.26 -0.1 5,119,197 + GEMAOFIL_04644 0.26 +0.1 5,119,208 + GEMAOFIL_04644 0.27 +0.0 5,119,209 - GEMAOFIL_04644 0.28 -0.1 5,119,209 - GEMAOFIL_04644 0.28 -0.7 5,119,227 + GEMAOFIL_04644 0.30 +0.3 5,119,227 + GEMAOFIL_04644 0.30 -0.4 5,119,228 - GEMAOFIL_04644 0.30 +0.5 5,119,228 - GEMAOFIL_04644 0.30 +0.6 5,119,228 - GEMAOFIL_04644 0.30 +1.1 5,119,262 - GEMAOFIL_04644 0.35 +2.3 5,119,262 - GEMAOFIL_04644 0.35 -0.7 5,119,490 + GEMAOFIL_04644 0.65 -0.6 5,119,490 + GEMAOFIL_04644 0.65 +0.6 5,119,772 - -0.4 5,119,780 + +0.4 5,119,781 - +0.0 5,119,814 + -0.1 5,119,814 + +0.3 5,119,815 - -1.9 5,119,856 - +0.2 5,119,863 + +0.1 5,119,888 + +1.8 5,119,889 - +0.2
Or see this region's nucleotide sequence