Experiment: Seed; RBT.2.2.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04398 and GEMAOFIL_04399 overlap by 4 nucleotides GEMAOFIL_04399 and GEMAOFIL_04400 are separated by 9 nucleotides GEMAOFIL_04400 and GEMAOFIL_04401 are separated by 84 nucleotides
GEMAOFIL_04398: GEMAOFIL_04398 - Peptidoglycan-associated lipoprotein, at 4,874,968 to 4,875,783
_04398
GEMAOFIL_04399: GEMAOFIL_04399 - hypothetical protein, at 4,875,780 to 4,876,142
_04399
GEMAOFIL_04400: GEMAOFIL_04400 - hypothetical protein, at 4,876,152 to 4,876,967
_04400
GEMAOFIL_04401: GEMAOFIL_04401 - Electron transfer flavoprotein subunit alpha, at 4,877,052 to 4,877,981
_04401
Position (kb) 4876
4877 Strain fitness (log2 ratio) -1
0
1
2 at 4875.533 kb on + strand, within GEMAOFIL_04398 at 4875.533 kb on + strand, within GEMAOFIL_04398 at 4875.534 kb on - strand, within GEMAOFIL_04398 at 4875.534 kb on - strand, within GEMAOFIL_04398 at 4875.539 kb on + strand, within GEMAOFIL_04398 at 4875.539 kb on + strand, within GEMAOFIL_04398 at 4875.539 kb on + strand, within GEMAOFIL_04398 at 4875.540 kb on - strand, within GEMAOFIL_04398 at 4875.934 kb on + strand, within GEMAOFIL_04399 at 4875.935 kb on - strand, within GEMAOFIL_04399 at 4875.935 kb on - strand, within GEMAOFIL_04399 at 4876.154 kb on - strand at 4876.321 kb on + strand, within GEMAOFIL_04400 at 4876.322 kb on - strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.424 kb on - strand, within GEMAOFIL_04400 at 4876.583 kb on - strand, within GEMAOFIL_04400 at 4876.648 kb on + strand, within GEMAOFIL_04400 at 4876.648 kb on + strand, within GEMAOFIL_04400 at 4876.648 kb on + strand, within GEMAOFIL_04400 at 4876.649 kb on - strand, within GEMAOFIL_04400 at 4876.716 kb on + strand, within GEMAOFIL_04400 at 4876.717 kb on - strand, within GEMAOFIL_04400 at 4876.751 kb on - strand, within GEMAOFIL_04400 at 4876.751 kb on - strand, within GEMAOFIL_04400 at 4876.897 kb on - strand at 4877.034 kb on - strand at 4877.035 kb on + strand at 4877.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Seed; RBT.2.2.5 remove 4,875,533 + GEMAOFIL_04398 0.69 -0.4 4,875,533 + GEMAOFIL_04398 0.69 +1.0 4,875,534 - GEMAOFIL_04398 0.69 +0.3 4,875,534 - GEMAOFIL_04398 0.69 +0.7 4,875,539 + GEMAOFIL_04398 0.70 +0.8 4,875,539 + GEMAOFIL_04398 0.70 -0.8 4,875,539 + GEMAOFIL_04398 0.70 -0.1 4,875,540 - GEMAOFIL_04398 0.70 +0.2 4,875,934 + GEMAOFIL_04399 0.42 -0.4 4,875,935 - GEMAOFIL_04399 0.43 -0.7 4,875,935 - GEMAOFIL_04399 0.43 -0.5 4,876,154 - +0.6 4,876,321 + GEMAOFIL_04400 0.21 +0.0 4,876,322 - GEMAOFIL_04400 0.21 -0.7 4,876,423 + GEMAOFIL_04400 0.33 -0.1 4,876,423 + GEMAOFIL_04400 0.33 -0.0 4,876,423 + GEMAOFIL_04400 0.33 -0.4 4,876,423 + GEMAOFIL_04400 0.33 +0.4 4,876,424 - GEMAOFIL_04400 0.33 +2.0 4,876,583 - GEMAOFIL_04400 0.53 -0.1 4,876,648 + GEMAOFIL_04400 0.61 -0.1 4,876,648 + GEMAOFIL_04400 0.61 +0.7 4,876,648 + GEMAOFIL_04400 0.61 +1.0 4,876,649 - GEMAOFIL_04400 0.61 +1.6 4,876,716 + GEMAOFIL_04400 0.69 -0.4 4,876,717 - GEMAOFIL_04400 0.69 +1.1 4,876,751 - GEMAOFIL_04400 0.73 -0.4 4,876,751 - GEMAOFIL_04400 0.73 -0.2 4,876,897 - +2.0 4,877,034 - -0.1 4,877,035 + +1.3 4,877,036 - -0.5
Or see this region's nucleotide sequence