Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_03025

Experiment: Seed; RBT.2.2.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Seed; RBT.2.2.5
3,318,177	+		GEMAOFIL_03023	0.89	+0.9
3,318,229	+				+0.1
3,318,309	+				+0.3
3,318,334	+				-0.1
3,318,458	-		GEMAOFIL_03024	0.23	+1.4
3,318,458	-		GEMAOFIL_03024	0.23	-0.6
3,318,490	+		GEMAOFIL_03024	0.29	+0.2
3,318,491	-		GEMAOFIL_03024	0.29	-1.0
3,318,493	+		GEMAOFIL_03024	0.30	+0.6
3,318,493	+		GEMAOFIL_03024	0.30	+0.2
3,318,493	+		GEMAOFIL_03024	0.30	-0.6
3,318,493	+		GEMAOFIL_03024	0.30	-0.1
3,318,644	-		GEMAOFIL_03024	0.58	+0.2
3,318,650	-		GEMAOFIL_03024	0.59	-0.3
3,318,697	-		GEMAOFIL_03024	0.68	-0.6
3,318,697	-		GEMAOFIL_03024	0.68	-1.6
3,318,792	+		GEMAOFIL_03024	0.86	-0.4
3,318,865	-				+0.7
3,318,899	+				-0.4
3,319,163	-				-0.0
3,319,163	-				-1.1
3,319,263	+		GEMAOFIL_03025	0.12	-0.4
3,319,431	-		GEMAOFIL_03025	0.26	-0.6
3,319,470	-		GEMAOFIL_03025	0.29	+0.8
3,319,494	-		GEMAOFIL_03025	0.31	+0.1
3,319,494	-		GEMAOFIL_03025	0.31	+0.4
3,319,515	+		GEMAOFIL_03025	0.33	+0.3
3,319,516	-		GEMAOFIL_03025	0.33	-0.1
3,319,516	-		GEMAOFIL_03025	0.33	-0.0
3,319,516	-		GEMAOFIL_03025	0.33	-0.3
3,319,605	+		GEMAOFIL_03025	0.40	+0.1
3,319,606	-		GEMAOFIL_03025	0.40	+0.1
3,319,820	+		GEMAOFIL_03025	0.58	-0.8
3,319,820	+		GEMAOFIL_03025	0.58	-0.3
3,319,820	+		GEMAOFIL_03025	0.58	-0.1
3,319,820	+		GEMAOFIL_03025	0.58	-1.0
3,319,968	-		GEMAOFIL_03025	0.71	-0.4
3,320,043	+		GEMAOFIL_03025	0.77	-0.3
3,320,094	+		GEMAOFIL_03025	0.81	+0.3
3,320,139	+		GEMAOFIL_03025	0.85	-0.3
3,320,209	-				-0.4
3,320,223	+				-0.2
3,320,259	-				-0.4
3,320,259	-				-0.0
3,320,322	+				-0.1
3,320,381	+				-0.8
3,320,382	-				+0.4
3,320,382	-				+0.3
3,320,513	-				+0.0
3,320,646	+				-0.5
3,320,646	+				-0.5
3,320,647	-				-0.7
3,320,694	+				-0.2
3,320,924	-		GEMAOFIL_03026	0.18	-0.7
3,320,953	+		GEMAOFIL_03026	0.19	-0.0
3,320,967	+		GEMAOFIL_03026	0.20	-1.9
3,320,967	+		GEMAOFIL_03026	0.20	-0.0
3,320,967	+		GEMAOFIL_03026	0.20	-1.0
3,320,968	-		GEMAOFIL_03026	0.20	-0.9
3,320,981	+		GEMAOFIL_03026	0.21	-1.7
3,320,982	-		GEMAOFIL_03026	0.21	-0.3
3,320,990	+		GEMAOFIL_03026	0.22	-1.2
3,320,992	+		GEMAOFIL_03026	0.22	-0.2
3,320,993	-		GEMAOFIL_03026	0.22	+0.2
3,321,037	+		GEMAOFIL_03026	0.24	-0.4
3,321,137	-		GEMAOFIL_03026	0.31	+0.9
3,321,137	-		GEMAOFIL_03026	0.31	-1.5
3,321,149	-		GEMAOFIL_03026	0.31	-0.5