Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_01062

Experiment: Seed; RBT.2.2.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_01060 and GEMAOFIL_01061 are separated by 48 nucleotidesGEMAOFIL_01061 and GEMAOFIL_01062 are separated by 16 nucleotidesGEMAOFIL_01062 and GEMAOFIL_01063 are separated by 45 nucleotidesGEMAOFIL_01063 and GEMAOFIL_01064 are separated by 108 nucleotides GEMAOFIL_01060: GEMAOFIL_01060 - hypothetical protein, at 1,210,686 to 1,214,501 _01060 GEMAOFIL_01061: GEMAOFIL_01061 - Deaminated glutathione amidase, at 1,214,550 to 1,215,398 _01061 GEMAOFIL_01062: GEMAOFIL_01062 - Metalloprotease TldD, at 1,215,415 to 1,216,857 _01062 GEMAOFIL_01063: GEMAOFIL_01063 - hypothetical protein, at 1,216,903 to 1,217,424 _01063 GEMAOFIL_01064: GEMAOFIL_01064 - Metalloprotease PmbA, at 1,217,533 to 1,218,879 _01064 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -2 -1 0 1at 1214.433 kb on + strandat 1214.434 kb on - strandat 1214.514 kb on + strandat 1214.514 kb on + strandat 1214.515 kb on - strandat 1214.534 kb on + strandat 1214.779 kb on + strand, within GEMAOFIL_01061at 1214.780 kb on - strand, within GEMAOFIL_01061at 1214.955 kb on + strand, within GEMAOFIL_01061at 1214.956 kb on - strand, within GEMAOFIL_01061at 1215.021 kb on + strand, within GEMAOFIL_01061at 1215.130 kb on + strand, within GEMAOFIL_01061at 1215.130 kb on + strand, within GEMAOFIL_01061at 1215.131 kb on - strand, within GEMAOFIL_01061at 1215.166 kb on - strand, within GEMAOFIL_01061at 1215.305 kb on + strand, within GEMAOFIL_01061at 1215.415 kb on - strandat 1215.415 kb on - strandat 1215.617 kb on + strand, within GEMAOFIL_01062at 1215.617 kb on + strand, within GEMAOFIL_01062at 1215.618 kb on - strand, within GEMAOFIL_01062at 1215.658 kb on + strand, within GEMAOFIL_01062at 1215.663 kb on + strand, within GEMAOFIL_01062at 1215.778 kb on + strand, within GEMAOFIL_01062at 1215.778 kb on + strand, within GEMAOFIL_01062at 1215.779 kb on - strand, within GEMAOFIL_01062at 1215.779 kb on - strand, within GEMAOFIL_01062at 1215.957 kb on - strand, within GEMAOFIL_01062at 1215.957 kb on - strand, within GEMAOFIL_01062at 1216.260 kb on + strand, within GEMAOFIL_01062at 1216.503 kb on + strand, within GEMAOFIL_01062at 1216.503 kb on + strand, within GEMAOFIL_01062at 1216.504 kb on - strand, within GEMAOFIL_01062at 1216.507 kb on + strand, within GEMAOFIL_01062at 1216.507 kb on + strand, within GEMAOFIL_01062at 1216.508 kb on - strand, within GEMAOFIL_01062at 1216.508 kb on - strand, within GEMAOFIL_01062at 1216.508 kb on - strand, within GEMAOFIL_01062at 1216.508 kb on - strand, within GEMAOFIL_01062at 1216.568 kb on - strand, within GEMAOFIL_01062at 1216.599 kb on + strand, within GEMAOFIL_01062at 1216.662 kb on + strand, within GEMAOFIL_01062at 1216.943 kb on + strandat 1216.944 kb on - strandat 1216.944 kb on - strandat 1216.980 kb on + strand, within GEMAOFIL_01063at 1216.980 kb on + strand, within GEMAOFIL_01063at 1217.211 kb on + strand, within GEMAOFIL_01063at 1217.328 kb on + strand, within GEMAOFIL_01063at 1217.329 kb on - strand, within GEMAOFIL_01063at 1217.329 kb on - strand, within GEMAOFIL_01063at 1217.329 kb on - strand, within GEMAOFIL_01063at 1217.329 kb on - strand, within GEMAOFIL_01063at 1217.411 kb on + strandat 1217.456 kb on + strandat 1217.738 kb on - strand, within GEMAOFIL_01064

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Per-strain Table

Position Strand Gene LocusTag Fraction Seed; RBT.2.2.5
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1,214,433 + -0.1
1,214,434 - -0.3
1,214,514 + +0.4
1,214,514 + -0.8
1,214,515 - -0.4
1,214,534 + +0.1
1,214,779 + GEMAOFIL_01061 0.27 +0.4
1,214,780 - GEMAOFIL_01061 0.27 -0.0
1,214,955 + GEMAOFIL_01061 0.48 -1.0
1,214,956 - GEMAOFIL_01061 0.48 +0.5
1,215,021 + GEMAOFIL_01061 0.55 -0.7
1,215,130 + GEMAOFIL_01061 0.68 -0.9
1,215,130 + GEMAOFIL_01061 0.68 -1.6
1,215,131 - GEMAOFIL_01061 0.68 -0.4
1,215,166 - GEMAOFIL_01061 0.73 +0.2
1,215,305 + GEMAOFIL_01061 0.89 -0.4
1,215,415 - -2.4
1,215,415 - -1.0
1,215,617 + GEMAOFIL_01062 0.14 -0.7
1,215,617 + GEMAOFIL_01062 0.14 -0.9
1,215,618 - GEMAOFIL_01062 0.14 -0.9
1,215,658 + GEMAOFIL_01062 0.17 +0.4
1,215,663 + GEMAOFIL_01062 0.17 -1.8
1,215,778 + GEMAOFIL_01062 0.25 -0.9
1,215,778 + GEMAOFIL_01062 0.25 +0.3
1,215,779 - GEMAOFIL_01062 0.25 -1.3
1,215,779 - GEMAOFIL_01062 0.25 +0.0
1,215,957 - GEMAOFIL_01062 0.38 -0.1
1,215,957 - GEMAOFIL_01062 0.38 +0.3
1,216,260 + GEMAOFIL_01062 0.59 +0.5
1,216,503 + GEMAOFIL_01062 0.75 +0.4
1,216,503 + GEMAOFIL_01062 0.75 -0.9
1,216,504 - GEMAOFIL_01062 0.75 -0.1
1,216,507 + GEMAOFIL_01062 0.76 -0.3
1,216,507 + GEMAOFIL_01062 0.76 +0.4
1,216,508 - GEMAOFIL_01062 0.76 -1.1
1,216,508 - GEMAOFIL_01062 0.76 -0.1
1,216,508 - GEMAOFIL_01062 0.76 -0.1
1,216,508 - GEMAOFIL_01062 0.76 -0.6
1,216,568 - GEMAOFIL_01062 0.80 +0.7
1,216,599 + GEMAOFIL_01062 0.82 -1.0
1,216,662 + GEMAOFIL_01062 0.86 -1.2
1,216,943 + -0.7
1,216,944 - +0.3
1,216,944 - -0.2
1,216,980 + GEMAOFIL_01063 0.15 +0.2
1,216,980 + GEMAOFIL_01063 0.15 +0.3
1,217,211 + GEMAOFIL_01063 0.59 -0.3
1,217,328 + GEMAOFIL_01063 0.81 +0.4
1,217,329 - GEMAOFIL_01063 0.82 -0.1
1,217,329 - GEMAOFIL_01063 0.82 +0.4
1,217,329 - GEMAOFIL_01063 0.82 -0.0
1,217,329 - GEMAOFIL_01063 0.82 -1.0
1,217,411 + -0.9
1,217,456 + +0.1
1,217,738 - GEMAOFIL_01064 0.15 -0.3

Or see this region's nucleotide sequence