Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00979

Experiment: Seed; RBT.2.2.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00977 and GEMAOFIL_00978 are separated by 54 nucleotidesGEMAOFIL_00978 and GEMAOFIL_00979 are separated by 129 nucleotidesGEMAOFIL_00979 and GEMAOFIL_00980 are separated by 76 nucleotidesGEMAOFIL_00980 and GEMAOFIL_00981 overlap by 4 nucleotidesGEMAOFIL_00981 and GEMAOFIL_00982 overlap by 4 nucleotides GEMAOFIL_00977: GEMAOFIL_00977 - hypothetical protein, at 1,117,845 to 1,118,018 _00977 GEMAOFIL_00978: GEMAOFIL_00978 - hypothetical protein, at 1,118,073 to 1,118,702 _00978 GEMAOFIL_00979: GEMAOFIL_00979 - hypothetical protein, at 1,118,832 to 1,119,521 _00979 GEMAOFIL_00980: GEMAOFIL_00980 - hypothetical protein, at 1,119,598 to 1,119,813 _00980 GEMAOFIL_00981: GEMAOFIL_00981 - DNA gyrase inhibitor YacG, at 1,119,810 to 1,120,010 _00981 GEMAOFIL_00982: GEMAOFIL_00982 - Dephospho-CoA kinase, at 1,120,007 to 1,120,630 _00982 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -1 0 1at 1117.848 kb on + strandat 1117.972 kb on + strand, within GEMAOFIL_00977at 1117.973 kb on - strand, within GEMAOFIL_00977at 1117.973 kb on - strand, within GEMAOFIL_00977at 1118.018 kb on + strandat 1118.018 kb on + strandat 1118.018 kb on + strandat 1118.019 kb on - strandat 1118.019 kb on - strandat 1118.019 kb on - strandat 1118.019 kb on - strandat 1118.020 kb on + strandat 1118.020 kb on + strandat 1118.020 kb on + strandat 1118.020 kb on + strandat 1118.020 kb on + strandat 1118.020 kb on + strandat 1118.021 kb on - strandat 1118.060 kb on + strandat 1118.061 kb on - strandat 1118.089 kb on - strandat 1118.089 kb on - strandat 1118.089 kb on - strandat 1118.100 kb on + strandat 1118.100 kb on + strandat 1118.101 kb on - strandat 1118.212 kb on + strand, within GEMAOFIL_00978at 1118.213 kb on - strand, within GEMAOFIL_00978at 1118.317 kb on + strand, within GEMAOFIL_00978at 1118.318 kb on - strand, within GEMAOFIL_00978at 1118.403 kb on + strand, within GEMAOFIL_00978at 1118.403 kb on + strand, within GEMAOFIL_00978at 1118.407 kb on - strand, within GEMAOFIL_00978at 1118.687 kb on - strandat 1118.848 kb on + strandat 1118.849 kb on - strandat 1118.886 kb on + strandat 1119.034 kb on - strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.249 kb on + strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.250 kb on - strand, within GEMAOFIL_00979at 1119.251 kb on + strand, within GEMAOFIL_00979at 1119.251 kb on + strand, within GEMAOFIL_00979at 1119.251 kb on + strand, within GEMAOFIL_00979at 1119.252 kb on - strand, within GEMAOFIL_00979at 1119.376 kb on - strand, within GEMAOFIL_00979at 1119.408 kb on - strand, within GEMAOFIL_00979at 1119.607 kb on + strandat 1119.630 kb on - strand, within GEMAOFIL_00980at 1119.760 kb on + strand, within GEMAOFIL_00980at 1119.761 kb on - strand, within GEMAOFIL_00980at 1119.793 kb on + strandat 1119.793 kb on + strandat 1119.793 kb on + strandat 1119.794 kb on - strandat 1119.794 kb on - strandat 1119.794 kb on - strandat 1119.794 kb on - strandat 1119.801 kb on + strandat 1120.030 kb on + strandat 1120.031 kb on - strandat 1120.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Seed; RBT.2.2.5
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1,117,848 + +0.2
1,117,972 + GEMAOFIL_00977 0.73 +0.4
1,117,973 - GEMAOFIL_00977 0.74 -0.2
1,117,973 - GEMAOFIL_00977 0.74 +0.8
1,118,018 + -0.8
1,118,018 + +0.7
1,118,018 + +0.0
1,118,019 - -0.3
1,118,019 - +0.4
1,118,019 - +0.4
1,118,019 - -0.2
1,118,020 + +0.2
1,118,020 + -0.0
1,118,020 + +0.2
1,118,020 + -0.2
1,118,020 + +0.1
1,118,020 + +1.7
1,118,021 - +0.3
1,118,060 + +0.1
1,118,061 - -0.1
1,118,089 - +0.0
1,118,089 - +0.4
1,118,089 - +1.1
1,118,100 + -0.3
1,118,100 + -0.1
1,118,101 - -0.5
1,118,212 + GEMAOFIL_00978 0.22 +0.8
1,118,213 - GEMAOFIL_00978 0.22 +1.0
1,118,317 + GEMAOFIL_00978 0.39 -0.3
1,118,318 - GEMAOFIL_00978 0.39 -0.8
1,118,403 + GEMAOFIL_00978 0.52 -1.0
1,118,403 + GEMAOFIL_00978 0.52 +1.2
1,118,407 - GEMAOFIL_00978 0.53 -0.3
1,118,687 - -0.3
1,118,848 + -0.2
1,118,849 - +0.4
1,118,886 + -0.1
1,119,034 - GEMAOFIL_00979 0.29 -0.6
1,119,249 + GEMAOFIL_00979 0.60 -0.4
1,119,249 + GEMAOFIL_00979 0.60 +0.0
1,119,249 + GEMAOFIL_00979 0.60 +1.3
1,119,249 + GEMAOFIL_00979 0.60 +0.2
1,119,250 - GEMAOFIL_00979 0.61 -1.5
1,119,250 - GEMAOFIL_00979 0.61 -0.2
1,119,250 - GEMAOFIL_00979 0.61 -0.3
1,119,250 - GEMAOFIL_00979 0.61 -0.2
1,119,250 - GEMAOFIL_00979 0.61 -0.1
1,119,250 - GEMAOFIL_00979 0.61 -0.0
1,119,251 + GEMAOFIL_00979 0.61 +0.4
1,119,251 + GEMAOFIL_00979 0.61 -0.4
1,119,251 + GEMAOFIL_00979 0.61 +0.2
1,119,252 - GEMAOFIL_00979 0.61 +0.7
1,119,376 - GEMAOFIL_00979 0.79 +0.5
1,119,408 - GEMAOFIL_00979 0.83 +0.6
1,119,607 + -0.5
1,119,630 - GEMAOFIL_00980 0.15 -0.4
1,119,760 + GEMAOFIL_00980 0.75 +0.0
1,119,761 - GEMAOFIL_00980 0.75 -0.8
1,119,793 + +0.2
1,119,793 + -0.3
1,119,793 + -0.3
1,119,794 - +0.3
1,119,794 - -0.0
1,119,794 - +0.5
1,119,794 - -1.0
1,119,801 + -1.7
1,120,030 + +0.6
1,120,031 - +0.3
1,120,031 - -0.6

Or see this region's nucleotide sequence