Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00978

Experiment: Seed; RBT.2.2.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Seed; RBT.2.2.5
1,117,091	+		GEMAOFIL_00976	0.47	-0.2
1,117,091	+		GEMAOFIL_00976	0.47	+0.7
1,117,091	+		GEMAOFIL_00976	0.47	-0.4
1,117,109	+		GEMAOFIL_00976	0.48	-0.2
1,117,290	+		GEMAOFIL_00976	0.62	+0.7
1,117,291	-		GEMAOFIL_00976	0.62	-0.4
1,117,291	-		GEMAOFIL_00976	0.62	-0.2
1,117,450	+		GEMAOFIL_00976	0.74	-0.3
1,117,544	+		GEMAOFIL_00976	0.81	+0.5
1,117,545	-		GEMAOFIL_00976	0.82	+0.2
1,117,591	+		GEMAOFIL_00976	0.85	-0.0
1,117,591	+		GEMAOFIL_00976	0.85	-0.1
1,117,592	-		GEMAOFIL_00976	0.85	-1.0
1,117,592	-		GEMAOFIL_00976	0.85	-1.1
1,117,645	-		GEMAOFIL_00976	0.89	-1.0
1,117,718	+				-0.5
1,117,767	-				+0.1
1,117,770	-				-1.0
1,117,772	+				-0.4
1,117,772	+				-1.8
1,117,772	+				-0.6
1,117,772	+				+0.3
1,117,772	+				-0.4
1,117,790	+				-0.0
1,117,791	-				-1.2
1,117,791	-				-0.8
1,117,822	+				+0.0
1,117,823	-				+1.3
1,117,848	+				+0.2
1,117,972	+		GEMAOFIL_00977	0.73	+0.4
1,117,973	-		GEMAOFIL_00977	0.74	-0.2
1,117,973	-		GEMAOFIL_00977	0.74	+0.8
1,118,018	+				-0.8
1,118,018	+				+0.7
1,118,018	+				+0.0
1,118,019	-				-0.3
1,118,019	-				+0.4
1,118,019	-				+0.4
1,118,019	-				-0.2
1,118,020	+				+0.2
1,118,020	+				-0.0
1,118,020	+				+0.2
1,118,020	+				-0.2
1,118,020	+				+0.1
1,118,020	+				+1.7
1,118,021	-				+0.3
1,118,060	+				+0.1
1,118,061	-				-0.1
1,118,089	-				+0.0
1,118,089	-				+0.4
1,118,089	-				+1.1
1,118,100	+				-0.3
1,118,100	+				-0.1
1,118,101	-				-0.5
1,118,212	+		GEMAOFIL_00978	0.22	+0.8
1,118,213	-		GEMAOFIL_00978	0.22	+1.0
1,118,317	+		GEMAOFIL_00978	0.39	-0.3
1,118,318	-		GEMAOFIL_00978	0.39	-0.8
1,118,403	+		GEMAOFIL_00978	0.52	-1.0
1,118,403	+		GEMAOFIL_00978	0.52	+1.2
1,118,407	-		GEMAOFIL_00978	0.53	-0.3
1,118,687	-				-0.3
1,118,848	+				-0.2
1,118,849	-				+0.4
1,118,886	+				-0.1
1,119,034	-		GEMAOFIL_00979	0.29	-0.6
1,119,249	+		GEMAOFIL_00979	0.60	-0.4
1,119,249	+		GEMAOFIL_00979	0.60	+0.0
1,119,249	+		GEMAOFIL_00979	0.60	+1.3
1,119,249	+		GEMAOFIL_00979	0.60	+0.2
1,119,250	-		GEMAOFIL_00979	0.61	-1.5
1,119,250	-		GEMAOFIL_00979	0.61	-0.2
1,119,250	-		GEMAOFIL_00979	0.61	-0.3
1,119,250	-		GEMAOFIL_00979	0.61	-0.2
1,119,250	-		GEMAOFIL_00979	0.61	-0.1
1,119,250	-		GEMAOFIL_00979	0.61	-0.0
1,119,251	+		GEMAOFIL_00979	0.61	+0.4
1,119,251	+		GEMAOFIL_00979	0.61	-0.4
1,119,251	+		GEMAOFIL_00979	0.61	+0.2
1,119,252	-		GEMAOFIL_00979	0.61	+0.7
1,119,376	-		GEMAOFIL_00979	0.79	+0.5
1,119,408	-		GEMAOFIL_00979	0.83	+0.6
1,119,607	+				-0.5
1,119,630	-		GEMAOFIL_00980	0.15	-0.4