Strain Fitness in Erwinia amylovora T8 around OLJFJH_00800

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00790 and OLJFJH_00795 are separated by 63 nucleotidesOLJFJH_00795 and OLJFJH_00800 are separated by 67 nucleotidesOLJFJH_00800 and OLJFJH_00805 overlap by 4 nucleotidesOLJFJH_00805 and OLJFJH_00810 are separated by 22 nucleotides OLJFJH_00790: OLJFJH_00790 - pantoate--beta-alanine ligase, at 77,709 to 78,563 _00790 OLJFJH_00795: OLJFJH_00795 - aspartate 1-decarboxylase, at 78,627 to 79,007 _00795 OLJFJH_00800: OLJFJH_00800 - ABC transporter permease, at 79,075 to 79,845 _00800 OLJFJH_00805: OLJFJH_00805 - ABC transporter, at 79,842 to 80,768 _00805 OLJFJH_00810: OLJFJH_00810 - carbonate dehydratase, at 80,791 to 81,663 _00810 Position (kb) 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 78.165 kb on + strand, within OLJFJH_00790at 78.222 kb on - strand, within OLJFJH_00790at 78.222 kb on - strand, within OLJFJH_00790at 78.561 kb on + strandat 78.562 kb on - strandat 78.587 kb on - strandat 78.635 kb on + strandat 78.635 kb on + strandat 78.635 kb on + strandat 78.638 kb on + strandat 78.639 kb on - strandat 78.690 kb on + strand, within OLJFJH_00795at 78.765 kb on + strand, within OLJFJH_00795at 78.765 kb on + strand, within OLJFJH_00795at 78.765 kb on + strand, within OLJFJH_00795at 78.765 kb on + strand, within OLJFJH_00795at 78.765 kb on + strand, within OLJFJH_00795at 78.765 kb on + strand, within OLJFJH_00795at 78.766 kb on - strand, within OLJFJH_00795at 78.766 kb on - strand, within OLJFJH_00795at 78.766 kb on - strand, within OLJFJH_00795at 78.766 kb on - strand, within OLJFJH_00795at 78.766 kb on - strand, within OLJFJH_00795at 78.798 kb on + strand, within OLJFJH_00795at 78.799 kb on - strand, within OLJFJH_00795at 78.799 kb on - strand, within OLJFJH_00795at 78.799 kb on - strand, within OLJFJH_00795at 78.799 kb on - strand, within OLJFJH_00795at 78.884 kb on + strand, within OLJFJH_00795at 78.894 kb on + strand, within OLJFJH_00795at 78.894 kb on + strand, within OLJFJH_00795at 78.895 kb on - strand, within OLJFJH_00795at 78.895 kb on - strand, within OLJFJH_00795at 78.898 kb on + strand, within OLJFJH_00795at 78.898 kb on + strand, within OLJFJH_00795at 78.899 kb on - strand, within OLJFJH_00795at 78.977 kb on - strandat 79.068 kb on + strandat 79.068 kb on + strandat 79.068 kb on + strandat 79.070 kb on + strandat 79.070 kb on + strandat 79.124 kb on + strandat 79.124 kb on + strandat 79.125 kb on - strandat 79.220 kb on + strand, within OLJFJH_00800at 79.221 kb on - strand, within OLJFJH_00800at 79.299 kb on - strand, within OLJFJH_00800at 79.299 kb on - strand, within OLJFJH_00800at 79.299 kb on - strand, within OLJFJH_00800at 79.521 kb on - strand, within OLJFJH_00800at 79.672 kb on - strand, within OLJFJH_00800at 79.673 kb on + strand, within OLJFJH_00800at 79.673 kb on + strand, within OLJFJH_00800at 79.673 kb on + strand, within OLJFJH_00800at 79.673 kb on + strand, within OLJFJH_00800at 79.673 kb on + strand, within OLJFJH_00800at 79.674 kb on - strand, within OLJFJH_00800at 79.725 kb on + strand, within OLJFJH_00800at 79.734 kb on - strand, within OLJFJH_00800at 79.746 kb on + strand, within OLJFJH_00800at 79.779 kb on + strandat 79.803 kb on + strandat 79.812 kb on + strandat 79.850 kb on + strandat 79.851 kb on - strandat 79.851 kb on - strandat 79.851 kb on - strandat 79.851 kb on - strandat 79.916 kb on + strandat 79.917 kb on - strandat 79.920 kb on + strandat 79.920 kb on + strandat 79.921 kb on - strandat 80.127 kb on + strand, within OLJFJH_00805at 80.185 kb on + strand, within OLJFJH_00805at 80.186 kb on - strand, within OLJFJH_00805at 80.222 kb on + strand, within OLJFJH_00805at 80.484 kb on + strand, within OLJFJH_00805at 80.485 kb on - strand, within OLJFJH_00805at 80.605 kb on - strand, within OLJFJH_00805at 80.669 kb on - strand, within OLJFJH_00805at 80.669 kb on - strand, within OLJFJH_00805at 80.669 kb on - strand, within OLJFJH_00805at 80.761 kb on + strandat 80.762 kb on - strandat 80.762 kb on - strandat 80.768 kb on + strandat 80.768 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-2
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78,165 + OLJFJH_00790 0.53 -1.3
78,222 - OLJFJH_00790 0.60 -0.1
78,222 - OLJFJH_00790 0.60 +1.1
78,561 + -0.2
78,562 - -0.4
78,587 - +1.3
78,635 + +2.0
78,635 + -0.2
78,635 + +1.3
78,638 + -0.3
78,639 - +0.1
78,690 + OLJFJH_00795 0.17 +1.0
78,765 + OLJFJH_00795 0.36 +0.2
78,765 + OLJFJH_00795 0.36 +0.9
78,765 + OLJFJH_00795 0.36 -0.0
78,765 + OLJFJH_00795 0.36 -0.0
78,765 + OLJFJH_00795 0.36 -0.9
78,765 + OLJFJH_00795 0.36 -0.1
78,766 - OLJFJH_00795 0.36 -0.9
78,766 - OLJFJH_00795 0.36 +1.5
78,766 - OLJFJH_00795 0.36 +0.1
78,766 - OLJFJH_00795 0.36 +0.1
78,766 - OLJFJH_00795 0.36 -0.2
78,798 + OLJFJH_00795 0.45 +0.3
78,799 - OLJFJH_00795 0.45 -0.1
78,799 - OLJFJH_00795 0.45 +1.2
78,799 - OLJFJH_00795 0.45 -0.1
78,799 - OLJFJH_00795 0.45 -0.1
78,884 + OLJFJH_00795 0.67 +0.1
78,894 + OLJFJH_00795 0.70 +0.5
78,894 + OLJFJH_00795 0.70 +0.1
78,895 - OLJFJH_00795 0.70 -0.5
78,895 - OLJFJH_00795 0.70 +0.2
78,898 + OLJFJH_00795 0.71 +0.3
78,898 + OLJFJH_00795 0.71 +0.5
78,899 - OLJFJH_00795 0.71 -0.8
78,977 - +0.8
79,068 + -0.4
79,068 + +0.9
79,068 + -1.1
79,070 + -0.2
79,070 + +0.6
79,124 + +0.3
79,124 + +4.6
79,125 - -0.1
79,220 + OLJFJH_00800 0.19 -0.1
79,221 - OLJFJH_00800 0.19 -1.5
79,299 - OLJFJH_00800 0.29 +0.1
79,299 - OLJFJH_00800 0.29 +1.3
79,299 - OLJFJH_00800 0.29 +0.3
79,521 - OLJFJH_00800 0.58 +2.1
79,672 - OLJFJH_00800 0.77 -0.7
79,673 + OLJFJH_00800 0.78 -0.4
79,673 + OLJFJH_00800 0.78 -1.2
79,673 + OLJFJH_00800 0.78 +0.9
79,673 + OLJFJH_00800 0.78 +2.4
79,673 + OLJFJH_00800 0.78 +0.4
79,674 - OLJFJH_00800 0.78 +0.2
79,725 + OLJFJH_00800 0.84 +0.6
79,734 - OLJFJH_00800 0.85 +0.8
79,746 + OLJFJH_00800 0.87 +0.3
79,779 + +0.5
79,803 + +0.8
79,812 + +1.1
79,850 + +0.3
79,851 - -0.3
79,851 - -0.2
79,851 - -0.4
79,851 - -0.2
79,916 + -0.7
79,917 - +0.7
79,920 + -0.3
79,920 + +2.9
79,921 - -1.9
80,127 + OLJFJH_00805 0.31 -1.9
80,185 + OLJFJH_00805 0.37 -1.1
80,186 - OLJFJH_00805 0.37 -0.9
80,222 + OLJFJH_00805 0.41 -0.7
80,484 + OLJFJH_00805 0.69 -0.2
80,485 - OLJFJH_00805 0.69 -0.3
80,605 - OLJFJH_00805 0.82 -0.9
80,669 - OLJFJH_00805 0.89 +0.6
80,669 - OLJFJH_00805 0.89 -0.5
80,669 - OLJFJH_00805 0.89 -0.9
80,761 + -0.1
80,762 - -0.0
80,762 - +0.1
80,768 + +0.4
80,768 + +1.0
80,794 + +1.9
80,794 + +1.2
80,794 + -0.2
80,794 + +1.3
80,794 + +0.5
80,795 - -0.4

Or see this region's nucleotide sequence