Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccdA and ccdB are separated by 1 nucleotides ccdB and xerD are separated by 0 nucleotides xerD and HEPCGN_27220 are separated by 137 nucleotides HEPCGN_27220 and HEPCGN_27225 overlap by 7 nucleotides
HEPCGN_27205: ccdA - type II toxin-antitoxin system antitoxin CcdA, at 19,625 to 19,843
ccdA
HEPCGN_27210: ccdB - type II toxin-antitoxin system toxin CcdB, at 19,845 to 20,150
ccdB
HEPCGN_27215: xerD - resolvase, at 20,151 to 20,960
xerD
HEPCGN_27220: HEPCGN_27220 - CopG family transcriptional regulator, at 21,098 to 21,373
_27220
HEPCGN_27225: HEPCGN_27225 - chromosome partitioning protein ParA, at 21,367 to 22,011
_27225
Position (kb) 20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 19.161 kb on + strand at 19.162 kb on - strand at 19.162 kb on - strand at 19.197 kb on + strand at 19.197 kb on + strand at 19.197 kb on + strand at 19.198 kb on - strand at 19.202 kb on + strand at 19.202 kb on + strand at 19.206 kb on - strand at 19.222 kb on + strand at 19.278 kb on + strand at 19.290 kb on + strand at 19.298 kb on - strand at 19.307 kb on - strand at 19.307 kb on - strand at 19.308 kb on + strand at 19.308 kb on + strand at 19.308 kb on + strand at 19.308 kb on + strand at 19.308 kb on + strand at 19.308 kb on + strand at 19.308 kb on + strand at 19.309 kb on - strand at 19.309 kb on - strand at 19.309 kb on - strand at 19.309 kb on - strand at 19.309 kb on - strand at 19.365 kb on - strand at 19.365 kb on - strand at 19.365 kb on - strand at 19.365 kb on - strand at 19.407 kb on + strand at 19.450 kb on + strand at 19.450 kb on + strand at 19.450 kb on + strand at 19.491 kb on + strand at 19.496 kb on + strand at 19.516 kb on - strand at 19.516 kb on - strand at 19.516 kb on - strand at 19.523 kb on - strand at 19.532 kb on - strand at 19.543 kb on - strand at 19.581 kb on + strand at 19.860 kb on + strand at 19.860 kb on + strand at 19.860 kb on + strand at 19.860 kb on + strand at 19.860 kb on + strand at 19.861 kb on - strand at 19.866 kb on + strand at 19.868 kb on + strand at 19.869 kb on - strand at 19.916 kb on + strand, within ccdB at 20.045 kb on + strand, within ccdB at 20.148 kb on + strand at 20.148 kb on + strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.167 kb on + strand at 20.167 kb on + strand at 20.167 kb on + strand at 20.168 kb on - strand at 20.168 kb on - strand at 20.302 kb on - strand, within xerD at 20.337 kb on + strand, within xerD at 20.337 kb on + strand, within xerD at 20.338 kb on - strand, within xerD at 20.399 kb on + strand, within xerD at 20.399 kb on + strand, within xerD at 20.565 kb on + strand, within xerD at 20.621 kb on + strand, within xerD at 20.625 kb on - strand, within xerD at 20.756 kb on + strand, within xerD at 20.756 kb on + strand, within xerD at 20.756 kb on + strand, within xerD at 20.757 kb on - strand, within xerD at 20.772 kb on + strand, within xerD at 20.773 kb on - strand, within xerD at 20.800 kb on + strand, within xerD at 20.800 kb on + strand, within xerD at 20.834 kb on + strand, within xerD at 20.834 kb on + strand, within xerD at 20.834 kb on + strand, within xerD at 20.834 kb on + strand, within xerD at 20.835 kb on - strand, within xerD at 20.860 kb on - strand, within xerD at 21.018 kb on + strand at 21.019 kb on - strand at 21.019 kb on - strand at 21.019 kb on - strand at 21.033 kb on - strand at 21.099 kb on + strand at 21.099 kb on + strand at 21.118 kb on - strand at 21.166 kb on + strand, within HEPCGN_27220 at 21.179 kb on - strand, within HEPCGN_27220 at 21.201 kb on - strand, within HEPCGN_27220 at 21.201 kb on - strand, within HEPCGN_27220 at 21.324 kb on - strand, within HEPCGN_27220 at 21.329 kb on - strand, within HEPCGN_27220 at 21.383 kb on - strand at 21.383 kb on - strand at 21.395 kb on - strand at 21.424 kb on - strand at 21.424 kb on - strand at 21.489 kb on + strand, within HEPCGN_27225 at 21.531 kb on - strand, within HEPCGN_27225 at 21.599 kb on + strand, within HEPCGN_27225 at 21.600 kb on - strand, within HEPCGN_27225 at 21.600 kb on - strand, within HEPCGN_27225 at 21.607 kb on - strand, within HEPCGN_27225 at 21.638 kb on - strand, within HEPCGN_27225 at 21.650 kb on - strand, within HEPCGN_27225 at 21.658 kb on - strand, within HEPCGN_27225 at 21.658 kb on - strand, within HEPCGN_27225 at 21.689 kb on - strand, within HEPCGN_27225 at 21.700 kb on + strand, within HEPCGN_27225 at 21.764 kb on - strand, within HEPCGN_27225 at 21.767 kb on - strand, within HEPCGN_27225 at 21.767 kb on - strand, within HEPCGN_27225 at 21.767 kb on - strand, within HEPCGN_27225 at 21.797 kb on - strand, within HEPCGN_27225 at 21.908 kb on - strand, within HEPCGN_27225 at 21.931 kb on - strand, within HEPCGN_27225 at 21.945 kb on + strand, within HEPCGN_27225 at 21.945 kb on + strand, within HEPCGN_27225
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 19,161 + +0.0 19,162 - +1.0 19,162 - -0.1 19,197 + +0.0 19,197 + -2.4 19,197 + +0.4 19,198 - -0.4 19,202 + -1.3 19,202 + +0.3 19,206 - -0.4 19,222 + +0.4 19,278 + -1.4 19,290 + -2.3 19,298 - +0.0 19,307 - -0.2 19,307 - -1.1 19,308 + +0.1 19,308 + -0.0 19,308 + +0.4 19,308 + +1.3 19,308 + -0.1 19,308 + +0.9 19,308 + -0.2 19,309 - -0.0 19,309 - +0.9 19,309 - -1.0 19,309 - -0.1 19,309 - -0.2 19,365 - +1.2 19,365 - -0.1 19,365 - +0.9 19,365 - +1.7 19,407 + +1.4 19,450 + -1.4 19,450 + -0.4 19,450 + -1.0 19,491 + +1.5 19,496 + +0.9 19,516 - +0.2 19,516 - +1.2 19,516 - -0.8 19,523 - -0.6 19,532 - +0.8 19,543 - +0.0 19,581 + -1.3 19,860 + -0.3 19,860 + -0.3 19,860 + +0.2 19,860 + -0.2 19,860 + -0.0 19,861 - -0.2 19,866 + -0.0 19,868 + -0.0 19,869 - -0.2 19,916 + ccdB HEPCGN_27210 0.23 -2.4 20,045 + ccdB HEPCGN_27210 0.65 -2.0 20,148 + -2.4 20,148 + +0.2 20,149 - +0.2 20,149 - +0.1 20,149 - -0.5 20,149 - -0.3 20,149 - +0.2 20,149 - -2.9 20,149 - +0.6 20,167 + -1.0 20,167 + +0.6 20,167 + +0.3 20,168 - +0.7 20,168 - -0.4 20,302 - xerD HEPCGN_27215 0.19 -2.9 20,337 + xerD HEPCGN_27215 0.23 +0.5 20,337 + xerD HEPCGN_27215 0.23 -0.4 20,338 - xerD HEPCGN_27215 0.23 +0.1 20,399 + xerD HEPCGN_27215 0.31 -1.9 20,399 + xerD HEPCGN_27215 0.31 -0.3 20,565 + xerD HEPCGN_27215 0.51 +0.1 20,621 + xerD HEPCGN_27215 0.58 +0.9 20,625 - xerD HEPCGN_27215 0.59 +0.8 20,756 + xerD HEPCGN_27215 0.75 +1.1 20,756 + xerD HEPCGN_27215 0.75 +0.5 20,756 + xerD HEPCGN_27215 0.75 -0.3 20,757 - xerD HEPCGN_27215 0.75 -0.2 20,772 + xerD HEPCGN_27215 0.77 +0.6 20,773 - xerD HEPCGN_27215 0.77 +0.1 20,800 + xerD HEPCGN_27215 0.80 -1.0 20,800 + xerD HEPCGN_27215 0.80 -1.1 20,834 + xerD HEPCGN_27215 0.84 +0.1 20,834 + xerD HEPCGN_27215 0.84 +3.0 20,834 + xerD HEPCGN_27215 0.84 -0.8 20,834 + xerD HEPCGN_27215 0.84 -0.3 20,835 - xerD HEPCGN_27215 0.84 +1.2 20,860 - xerD HEPCGN_27215 0.88 +0.9 21,018 + +0.1 21,019 - -1.4 21,019 - +0.2 21,019 - +0.1 21,033 - +0.7 21,099 + -2.1 21,099 + -1.8 21,118 - -1.7 21,166 + HEPCGN_27220 0.25 -0.5 21,179 - HEPCGN_27220 0.29 -1.5 21,201 - HEPCGN_27220 0.37 -2.3 21,201 - HEPCGN_27220 0.37 -3.0 21,324 - HEPCGN_27220 0.82 -1.2 21,329 - HEPCGN_27220 0.84 -2.3 21,383 - +1.4 21,383 - +0.1 21,395 - +0.4 21,424 - +0.8 21,424 - -1.1 21,489 + HEPCGN_27225 0.19 +1.9 21,531 - HEPCGN_27225 0.25 -0.3 21,599 + HEPCGN_27225 0.36 -1.7 21,600 - HEPCGN_27225 0.36 -0.8 21,600 - HEPCGN_27225 0.36 +0.3 21,607 - HEPCGN_27225 0.37 -1.6 21,638 - HEPCGN_27225 0.42 -3.6 21,650 - HEPCGN_27225 0.44 -1.5 21,658 - HEPCGN_27225 0.45 +0.6 21,658 - HEPCGN_27225 0.45 -4.5 21,689 - HEPCGN_27225 0.50 +1.4 21,700 + HEPCGN_27225 0.52 -2.1 21,764 - HEPCGN_27225 0.62 -1.5 21,767 - HEPCGN_27225 0.62 -1.5 21,767 - HEPCGN_27225 0.62 -0.7 21,767 - HEPCGN_27225 0.62 +0.2 21,797 - HEPCGN_27225 0.67 -1.6 21,908 - HEPCGN_27225 0.84 -0.6 21,931 - HEPCGN_27225 0.87 +0.5 21,945 + HEPCGN_27225 0.90 +1.1 21,945 + HEPCGN_27225 0.90 +1.2
Or see this region's nucleotide sequence