Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20000

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,748,100	+	ygaH	HEPCGN_19990	0.63	+0.6
2,748,106	+	ygaH	HEPCGN_19990	0.65	+0.2
2,748,215	+				+1.1
2,748,335	+	ygaZ	HEPCGN_19995	0.17	+0.6
2,748,395	-	ygaZ	HEPCGN_19995	0.25	+0.9
2,748,412	+	ygaZ	HEPCGN_19995	0.27	+0.9
2,748,476	+	ygaZ	HEPCGN_19995	0.36	+0.2
2,748,647	-	ygaZ	HEPCGN_19995	0.59	+0.4
2,748,728	-	ygaZ	HEPCGN_19995	0.70	+0.1
2,748,862	+	ygaZ	HEPCGN_19995	0.88	+0.6
2,748,869	-	ygaZ	HEPCGN_19995	0.89	+0.9
2,748,869	-	ygaZ	HEPCGN_19995	0.89	+0.9
2,748,869	-	ygaZ	HEPCGN_19995	0.89	+0.0
2,748,869	-	ygaZ	HEPCGN_19995	0.89	+1.2
2,748,869	-	ygaZ	HEPCGN_19995	0.89	+0.8
2,748,872	-	ygaZ	HEPCGN_19995	0.89	+0.5
2,748,937	+				-0.0
2,748,937	+				+0.9
2,748,949	+				+0.1
2,748,956	+				+0.9
2,748,973	-				+0.5
2,748,976	-				-0.0
2,748,981	-				+1.0
2,748,985	-				-0.3
2,749,028	+				+0.1
2,749,039	+				+0.9
2,749,039	+				+0.5
2,749,040	-				+0.7
2,749,040	-				+0.4
2,749,040	-				+0.7
2,749,040	-				-0.3
2,749,046	-				+0.3
2,749,219	+	ygaY	HEPCGN_20000	0.12	+0.0
2,749,224	+	ygaY	HEPCGN_20000	0.13	+0.8
2,749,224	+	ygaY	HEPCGN_20000	0.13	+1.2
2,749,225	-	ygaY	HEPCGN_20000	0.13	+1.2
2,749,237	-	ygaY	HEPCGN_20000	0.14	-0.9
2,749,237	-	ygaY	HEPCGN_20000	0.14	-0.0
2,749,237	-	ygaY	HEPCGN_20000	0.14	-0.1
2,749,301	-	ygaY	HEPCGN_20000	0.19	+0.8
2,749,511	+	ygaY	HEPCGN_20000	0.37	-1.4
2,749,511	+	ygaY	HEPCGN_20000	0.37	+0.1
2,749,511	+	ygaY	HEPCGN_20000	0.37	+0.0
2,749,529	-	ygaY	HEPCGN_20000	0.38	-0.5
2,749,627	+	ygaY	HEPCGN_20000	0.47	-0.6
2,749,628	-	ygaY	HEPCGN_20000	0.47	+0.7
2,749,636	+	ygaY	HEPCGN_20000	0.48	+2.3
2,749,637	-	ygaY	HEPCGN_20000	0.48	-2.1
2,749,672	-	ygaY	HEPCGN_20000	0.51	+0.7
2,749,740	-	ygaY	HEPCGN_20000	0.56	-0.5
2,749,740	-	ygaY	HEPCGN_20000	0.56	+0.1
2,749,743	-	ygaY	HEPCGN_20000	0.57	+1.4
2,749,778	+	ygaY	HEPCGN_20000	0.59	+1.1
2,749,841	-	ygaY	HEPCGN_20000	0.65	+0.2
2,750,006	+	ygaY	HEPCGN_20000	0.79	-0.0
2,750,045	-	ygaY	HEPCGN_20000	0.82	-0.1
2,750,107	+	ygaY	HEPCGN_20000	0.87	+0.2
2,750,140	+				+0.5
2,750,172	+				-1.0
2,750,173	-				-2.4
2,750,175	+				-0.2
2,750,175	+				+1.8
2,750,176	-				-0.1
2,750,180	-				-0.3
2,750,233	+				-0.2
2,750,246	-				+0.8
2,750,252	-				-1.1
2,750,252	-				+0.3
2,750,252	-				-0.3
2,750,282	+				-3.6
2,750,283	-				-0.0
2,750,301	-				-0.4
2,750,332	-				-0.4
2,750,361	-				+0.9
2,750,364	+				-0.3
2,750,364	+				-1.2
2,750,365	-				-0.2
2,750,369	+				-0.6
2,750,369	+				+0.1
2,750,370	-				-0.4
2,750,402	-				-0.1
2,750,431	+				-0.8
2,750,566	-	proX	HEPCGN_20010	0.12	-0.2
2,750,677	-	proX	HEPCGN_20010	0.23	-0.9
2,750,826	-	proX	HEPCGN_20010	0.38	+1.0
2,750,839	-	proX	HEPCGN_20010	0.39	+1.4
2,750,849	+	proX	HEPCGN_20010	0.40	+0.2
2,750,981	-	proX	HEPCGN_20010	0.54	-0.7
2,750,992	-	proX	HEPCGN_20010	0.55	+0.3
2,751,037	-	proX	HEPCGN_20010	0.59	+0.8
2,751,060	+	proX	HEPCGN_20010	0.62	+0.7
2,751,119	-	proX	HEPCGN_20010	0.67	-0.2
2,751,162	-	proX	HEPCGN_20010	0.72	+0.2
2,751,231	-	proX	HEPCGN_20010	0.79	-0.1
2,751,243	-	proX	HEPCGN_20010	0.80	+0.1