Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt priA and cytR are separated by 155 nucleotides cytR and ftsN are separated by 196 nucleotides
HEPCGN_12365: priA - primosomal protein N', at 1,222,960 to 1,225,158
priA
HEPCGN_12370: cytR - DNA-binding transcriptional regulator CytR, at 1,225,314 to 1,226,339
cytR
HEPCGN_12375: ftsN - cell division protein FtsN, at 1,226,536 to 1,227,390
ftsN
Position (kb) 1225
1226
1227 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1225.269 kb on + strand at 1225.269 kb on + strand at 1225.270 kb on - strand at 1225.282 kb on - strand at 1225.284 kb on + strand at 1225.285 kb on - strand at 1225.285 kb on - strand at 1225.402 kb on + strand at 1225.470 kb on + strand, within cytR at 1225.471 kb on - strand, within cytR at 1225.485 kb on - strand, within cytR at 1225.795 kb on + strand, within cytR at 1225.795 kb on + strand, within cytR at 1225.795 kb on + strand, within cytR at 1225.795 kb on + strand, within cytR at 1225.796 kb on - strand, within cytR at 1225.796 kb on - strand, within cytR at 1225.799 kb on + strand, within cytR at 1225.800 kb on - strand, within cytR at 1225.800 kb on - strand, within cytR at 1225.808 kb on + strand, within cytR at 1225.808 kb on + strand, within cytR at 1225.809 kb on - strand, within cytR at 1225.809 kb on - strand, within cytR at 1225.851 kb on + strand, within cytR at 1225.881 kb on - strand, within cytR at 1225.881 kb on - strand, within cytR at 1225.882 kb on + strand, within cytR at 1225.929 kb on + strand, within cytR at 1225.974 kb on + strand, within cytR at 1225.974 kb on + strand, within cytR at 1226.051 kb on + strand, within cytR at 1226.234 kb on + strand, within cytR at 1226.234 kb on + strand, within cytR at 1226.235 kb on - strand, within cytR at 1226.242 kb on + strand at 1226.242 kb on + strand at 1226.243 kb on - strand at 1226.342 kb on + strand at 1226.351 kb on - strand at 1226.351 kb on - strand at 1226.388 kb on + strand at 1226.412 kb on + strand at 1226.916 kb on - strand, within ftsN at 1226.982 kb on + strand, within ftsN at 1226.983 kb on - strand, within ftsN at 1227.222 kb on - strand, within ftsN
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,225,269 + -1.4 1,225,269 + +0.3 1,225,270 - +0.1 1,225,282 - +1.2 1,225,284 + -0.3 1,225,285 - +0.3 1,225,285 - -0.5 1,225,402 + -0.4 1,225,470 + cytR HEPCGN_12370 0.15 -0.3 1,225,471 - cytR HEPCGN_12370 0.15 +0.4 1,225,485 - cytR HEPCGN_12370 0.17 +0.1 1,225,795 + cytR HEPCGN_12370 0.47 -1.3 1,225,795 + cytR HEPCGN_12370 0.47 +0.4 1,225,795 + cytR HEPCGN_12370 0.47 +0.0 1,225,795 + cytR HEPCGN_12370 0.47 +0.1 1,225,796 - cytR HEPCGN_12370 0.47 -0.9 1,225,796 - cytR HEPCGN_12370 0.47 +0.1 1,225,799 + cytR HEPCGN_12370 0.47 -1.9 1,225,800 - cytR HEPCGN_12370 0.47 -0.3 1,225,800 - cytR HEPCGN_12370 0.47 -2.0 1,225,808 + cytR HEPCGN_12370 0.48 -2.4 1,225,808 + cytR HEPCGN_12370 0.48 +0.4 1,225,809 - cytR HEPCGN_12370 0.48 -1.5 1,225,809 - cytR HEPCGN_12370 0.48 -0.9 1,225,851 + cytR HEPCGN_12370 0.52 -2.6 1,225,881 - cytR HEPCGN_12370 0.55 +1.2 1,225,881 - cytR HEPCGN_12370 0.55 +0.5 1,225,882 + cytR HEPCGN_12370 0.55 +0.6 1,225,929 + cytR HEPCGN_12370 0.60 -0.3 1,225,974 + cytR HEPCGN_12370 0.64 -0.0 1,225,974 + cytR HEPCGN_12370 0.64 -0.5 1,226,051 + cytR HEPCGN_12370 0.72 -0.1 1,226,234 + cytR HEPCGN_12370 0.90 -0.1 1,226,234 + cytR HEPCGN_12370 0.90 -0.0 1,226,235 - cytR HEPCGN_12370 0.90 -0.0 1,226,242 + +0.1 1,226,242 + -0.7 1,226,243 - -2.9 1,226,342 + +0.1 1,226,351 - -0.2 1,226,351 - -0.2 1,226,388 + -0.1 1,226,412 + -1.0 1,226,916 - ftsN HEPCGN_12375 0.44 -3.5 1,226,982 + ftsN HEPCGN_12375 0.52 -1.2 1,226,983 - ftsN HEPCGN_12375 0.52 +0.0 1,227,222 - ftsN HEPCGN_12375 0.80 -0.0
Or see this region's nucleotide sequence