Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09895 and HEPCGN_09900 are separated by 220 nucleotides HEPCGN_09900 and ythA are separated by 52 nucleotides ythA and yjhC are separated by 42 nucleotides yjhC and yjhB are separated by 11 nucleotides
HEPCGN_09895: HEPCGN_09895 - Transposase, at 724,314 to 724,490
_09895
HEPCGN_09900: HEPCGN_09900 - YjhD, at 724,711 to 725,061
_09900
HEPCGN_09905: ythA - Uncharacterized protein YthA, at 725,114 to 725,239
ythA
HEPCGN_09910: yjhC - Uncharacterized oxidoreductase YjhC, at 725,282 to 726,400
yjhC
HEPCGN_09915: yjhB - MFS transporter, at 726,412 to 727,629
yjhB
Position (kb) 725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 724.292 kb on - strand at 724.313 kb on - strand at 724.404 kb on - strand, within HEPCGN_09895 at 724.510 kb on + strand at 724.522 kb on - strand at 724.619 kb on + strand at 724.625 kb on + strand at 724.649 kb on - strand at 724.710 kb on - strand at 724.763 kb on - strand, within HEPCGN_09900 at 724.772 kb on + strand, within HEPCGN_09900 at 724.905 kb on + strand, within HEPCGN_09900 at 724.992 kb on + strand, within HEPCGN_09900 at 725.007 kb on - strand, within HEPCGN_09900 at 725.056 kb on - strand at 725.066 kb on + strand at 725.087 kb on + strand at 725.087 kb on + strand at 725.091 kb on + strand at 725.288 kb on + strand at 725.296 kb on + strand at 725.296 kb on + strand at 725.408 kb on - strand, within yjhC at 725.409 kb on + strand, within yjhC at 725.514 kb on + strand, within yjhC at 725.514 kb on + strand, within yjhC at 725.515 kb on - strand, within yjhC at 725.522 kb on - strand, within yjhC at 725.685 kb on + strand, within yjhC at 725.686 kb on - strand, within yjhC at 725.758 kb on + strand, within yjhC at 725.759 kb on - strand, within yjhC at 725.762 kb on + strand, within yjhC at 725.768 kb on - strand, within yjhC at 725.876 kb on + strand, within yjhC at 725.877 kb on - strand, within yjhC at 725.887 kb on - strand, within yjhC at 725.888 kb on + strand, within yjhC at 726.257 kb on - strand, within yjhC at 726.257 kb on - strand, within yjhC at 726.451 kb on - strand at 726.539 kb on + strand, within yjhB at 726.548 kb on - strand, within yjhB at 726.635 kb on + strand, within yjhB at 726.802 kb on - strand, within yjhB at 727.032 kb on - strand, within yjhB at 727.216 kb on - strand, within yjhB at 727.321 kb on + strand, within yjhB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 724,292 - -1.3 724,313 - -0.2 724,404 - HEPCGN_09895 0.51 -0.5 724,510 + -2.3 724,522 - -0.5 724,619 + +0.3 724,625 + -1.6 724,649 - -3.4 724,710 - -0.6 724,763 - HEPCGN_09900 0.15 +0.3 724,772 + HEPCGN_09900 0.17 -0.8 724,905 + HEPCGN_09900 0.55 +0.4 724,992 + HEPCGN_09900 0.80 -0.6 725,007 - HEPCGN_09900 0.84 -0.6 725,056 - +0.3 725,066 + +0.1 725,087 + +0.2 725,087 + +0.1 725,091 + -0.6 725,288 + -0.4 725,296 + +1.1 725,296 + -0.0 725,408 - yjhC HEPCGN_09910 0.11 -0.2 725,409 + yjhC HEPCGN_09910 0.11 -0.5 725,514 + yjhC HEPCGN_09910 0.21 +1.4 725,514 + yjhC HEPCGN_09910 0.21 +0.7 725,515 - yjhC HEPCGN_09910 0.21 -0.7 725,522 - yjhC HEPCGN_09910 0.21 +0.8 725,685 + yjhC HEPCGN_09910 0.36 +0.3 725,686 - yjhC HEPCGN_09910 0.36 +1.3 725,758 + yjhC HEPCGN_09910 0.43 -0.2 725,759 - yjhC HEPCGN_09910 0.43 +0.8 725,762 + yjhC HEPCGN_09910 0.43 +0.1 725,768 - yjhC HEPCGN_09910 0.43 +0.9 725,876 + yjhC HEPCGN_09910 0.53 +0.2 725,877 - yjhC HEPCGN_09910 0.53 +0.2 725,887 - yjhC HEPCGN_09910 0.54 -0.1 725,888 + yjhC HEPCGN_09910 0.54 -0.2 726,257 - yjhC HEPCGN_09910 0.87 -0.9 726,257 - yjhC HEPCGN_09910 0.87 -1.5 726,451 - +0.2 726,539 + yjhB HEPCGN_09915 0.10 +0.6 726,548 - yjhB HEPCGN_09915 0.11 +0.1 726,635 + yjhB HEPCGN_09915 0.18 +0.2 726,802 - yjhB HEPCGN_09915 0.32 -1.3 727,032 - yjhB HEPCGN_09915 0.51 +0.4 727,216 - yjhB HEPCGN_09915 0.66 -0.2 727,321 + yjhB HEPCGN_09915 0.75 +0.2
Or see this region's nucleotide sequence