Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaR and nhaA are separated by 65 nucleotides nhaA and HEPCGN_09020 are separated by 251 nucleotides
HEPCGN_09010: nhaR - transcriptional activator NhaR, at 549,103 to 550,002
nhaR
HEPCGN_09015: nhaA - Na+/H+ antiporter NhaA, at 550,068 to 551,234
nhaA
HEPCGN_09020: HEPCGN_09020 - cytoplasmic protein, at 551,486 to 552,730
_09020
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 549.082 kb on + strand at 549.083 kb on - strand at 549.134 kb on + strand at 549.135 kb on - strand at 549.141 kb on + strand at 549.201 kb on - strand, within nhaR at 549.201 kb on - strand, within nhaR at 549.264 kb on - strand, within nhaR at 549.269 kb on + strand, within nhaR at 549.270 kb on - strand, within nhaR at 549.356 kb on - strand, within nhaR at 549.541 kb on - strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.590 kb on - strand, within nhaR at 549.652 kb on + strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.670 kb on + strand, within nhaR at 549.671 kb on - strand, within nhaR at 549.691 kb on - strand, within nhaR at 549.743 kb on + strand, within nhaR at 549.744 kb on - strand, within nhaR at 549.795 kb on - strand, within nhaR at 549.917 kb on + strand at 549.957 kb on - strand at 549.972 kb on - strand at 549.987 kb on - strand at 549.987 kb on - strand at 550.128 kb on - strand at 550.160 kb on + strand at 550.160 kb on + strand at 550.160 kb on + strand at 550.160 kb on + strand at 550.176 kb on + strand at 550.209 kb on - strand, within nhaA at 550.214 kb on + strand, within nhaA at 550.214 kb on + strand, within nhaA at 550.214 kb on + strand, within nhaA at 550.215 kb on - strand, within nhaA at 550.218 kb on - strand, within nhaA at 550.261 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.323 kb on - strand, within nhaA at 550.326 kb on - strand, within nhaA at 550.424 kb on + strand, within nhaA at 550.526 kb on + strand, within nhaA at 550.526 kb on + strand, within nhaA at 550.527 kb on - strand, within nhaA at 550.610 kb on + strand, within nhaA at 550.612 kb on + strand, within nhaA at 550.698 kb on + strand, within nhaA at 550.699 kb on - strand, within nhaA at 550.707 kb on - strand, within nhaA at 550.754 kb on + strand, within nhaA at 550.755 kb on - strand, within nhaA at 550.889 kb on + strand, within nhaA at 550.889 kb on + strand, within nhaA at 551.052 kb on + strand, within nhaA at 551.153 kb on + strand at 551.180 kb on + strand at 551.187 kb on - strand at 551.210 kb on + strand at 551.277 kb on + strand at 551.409 kb on - strand at 551.430 kb on - strand at 551.488 kb on - strand at 551.519 kb on - strand at 551.522 kb on + strand at 551.597 kb on - strand at 551.680 kb on - strand, within HEPCGN_09020 at 551.754 kb on + strand, within HEPCGN_09020 at 551.754 kb on + strand, within HEPCGN_09020 at 551.754 kb on + strand, within HEPCGN_09020 at 551.887 kb on + strand, within HEPCGN_09020 at 551.892 kb on + strand, within HEPCGN_09020 at 551.979 kb on - strand, within HEPCGN_09020 at 552.029 kb on - strand, within HEPCGN_09020 at 552.087 kb on + strand, within HEPCGN_09020 at 552.106 kb on - strand, within HEPCGN_09020 at 552.199 kb on + strand, within HEPCGN_09020 at 552.200 kb on - strand, within HEPCGN_09020
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 549,082 + -2.1 549,083 - +1.4 549,134 + -1.7 549,135 - +0.3 549,141 + -0.7 549,201 - nhaR HEPCGN_09010 0.11 -0.1 549,201 - nhaR HEPCGN_09010 0.11 -0.4 549,264 - nhaR HEPCGN_09010 0.18 -0.3 549,269 + nhaR HEPCGN_09010 0.18 +0.7 549,270 - nhaR HEPCGN_09010 0.19 -0.3 549,356 - nhaR HEPCGN_09010 0.28 +0.7 549,541 - nhaR HEPCGN_09010 0.49 -0.1 549,589 + nhaR HEPCGN_09010 0.54 +0.2 549,589 + nhaR HEPCGN_09010 0.54 +0.8 549,589 + nhaR HEPCGN_09010 0.54 +1.6 549,590 - nhaR HEPCGN_09010 0.54 +0.8 549,652 + nhaR HEPCGN_09010 0.61 -0.5 549,667 - nhaR HEPCGN_09010 0.63 +0.9 549,667 - nhaR HEPCGN_09010 0.63 +0.4 549,670 + nhaR HEPCGN_09010 0.63 +0.5 549,671 - nhaR HEPCGN_09010 0.63 +1.4 549,691 - nhaR HEPCGN_09010 0.65 -0.7 549,743 + nhaR HEPCGN_09010 0.71 -0.1 549,744 - nhaR HEPCGN_09010 0.71 -1.0 549,795 - nhaR HEPCGN_09010 0.77 -0.7 549,917 + -0.1 549,957 - -0.3 549,972 - +1.4 549,987 - +0.4 549,987 - +0.4 550,128 - -0.8 550,160 + +0.2 550,160 + +0.3 550,160 + +3.2 550,160 + -2.1 550,176 + -0.5 550,209 - nhaA HEPCGN_09015 0.12 -2.2 550,214 + nhaA HEPCGN_09015 0.13 -1.7 550,214 + nhaA HEPCGN_09015 0.13 -2.5 550,214 + nhaA HEPCGN_09015 0.13 +1.7 550,215 - nhaA HEPCGN_09015 0.13 +0.7 550,218 - nhaA HEPCGN_09015 0.13 +0.3 550,261 + nhaA HEPCGN_09015 0.17 -1.1 550,322 + nhaA HEPCGN_09015 0.22 +0.7 550,322 + nhaA HEPCGN_09015 0.22 -0.1 550,322 + nhaA HEPCGN_09015 0.22 +0.3 550,322 + nhaA HEPCGN_09015 0.22 -0.2 550,323 - nhaA HEPCGN_09015 0.22 -1.1 550,326 - nhaA HEPCGN_09015 0.22 +1.8 550,424 + nhaA HEPCGN_09015 0.31 +0.3 550,526 + nhaA HEPCGN_09015 0.39 -1.7 550,526 + nhaA HEPCGN_09015 0.39 +0.6 550,527 - nhaA HEPCGN_09015 0.39 -1.5 550,610 + nhaA HEPCGN_09015 0.46 +0.3 550,612 + nhaA HEPCGN_09015 0.47 +0.3 550,698 + nhaA HEPCGN_09015 0.54 -0.6 550,699 - nhaA HEPCGN_09015 0.54 -1.2 550,707 - nhaA HEPCGN_09015 0.55 +0.6 550,754 + nhaA HEPCGN_09015 0.59 -1.3 550,755 - nhaA HEPCGN_09015 0.59 -0.1 550,889 + nhaA HEPCGN_09015 0.70 -0.5 550,889 + nhaA HEPCGN_09015 0.70 +1.2 551,052 + nhaA HEPCGN_09015 0.84 +2.0 551,153 + -1.6 551,180 + +0.1 551,187 - -1.2 551,210 + +0.2 551,277 + -0.5 551,409 - +0.9 551,430 - +0.7 551,488 - +1.1 551,519 - +0.7 551,522 + -0.6 551,597 - -1.0 551,680 - HEPCGN_09020 0.16 +2.7 551,754 + HEPCGN_09020 0.22 -0.4 551,754 + HEPCGN_09020 0.22 +0.4 551,754 + HEPCGN_09020 0.22 -2.6 551,887 + HEPCGN_09020 0.32 +0.2 551,892 + HEPCGN_09020 0.33 -0.3 551,979 - HEPCGN_09020 0.40 -0.8 552,029 - HEPCGN_09020 0.44 -0.3 552,087 + HEPCGN_09020 0.48 -0.4 552,106 - HEPCGN_09020 0.50 -1.2 552,199 + HEPCGN_09020 0.57 -0.5 552,200 - HEPCGN_09020 0.57 -1.6
Or see this region's nucleotide sequence