Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09005 and nhaR are separated by 37 nucleotides nhaR and nhaA are separated by 65 nucleotides
HEPCGN_09005: HEPCGN_09005 - fimbrial family protein, at 548,106 to 549,065
_09005
HEPCGN_09010: nhaR - transcriptional activator NhaR, at 549,103 to 550,002
nhaR
HEPCGN_09015: nhaA - Na+/H+ antiporter NhaA, at 550,068 to 551,234
nhaA
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 548.435 kb on - strand, within HEPCGN_09005 at 548.793 kb on + strand, within HEPCGN_09005 at 548.878 kb on + strand, within HEPCGN_09005 at 548.935 kb on - strand, within HEPCGN_09005 at 548.935 kb on - strand, within HEPCGN_09005 at 548.937 kb on + strand, within HEPCGN_09005 at 548.980 kb on + strand at 549.057 kb on + strand at 549.057 kb on + strand at 549.058 kb on - strand at 549.063 kb on + strand at 549.064 kb on - strand at 549.082 kb on + strand at 549.083 kb on - strand at 549.134 kb on + strand at 549.135 kb on - strand at 549.141 kb on + strand at 549.201 kb on - strand, within nhaR at 549.201 kb on - strand, within nhaR at 549.264 kb on - strand, within nhaR at 549.269 kb on + strand, within nhaR at 549.270 kb on - strand, within nhaR at 549.356 kb on - strand, within nhaR at 549.541 kb on - strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.590 kb on - strand, within nhaR at 549.652 kb on + strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.670 kb on + strand, within nhaR at 549.671 kb on - strand, within nhaR at 549.691 kb on - strand, within nhaR at 549.743 kb on + strand, within nhaR at 549.744 kb on - strand, within nhaR at 549.795 kb on - strand, within nhaR at 549.917 kb on + strand at 549.957 kb on - strand at 549.972 kb on - strand at 549.987 kb on - strand at 549.987 kb on - strand at 550.128 kb on - strand at 550.160 kb on + strand at 550.160 kb on + strand at 550.160 kb on + strand at 550.160 kb on + strand at 550.176 kb on + strand at 550.209 kb on - strand, within nhaA at 550.214 kb on + strand, within nhaA at 550.214 kb on + strand, within nhaA at 550.214 kb on + strand, within nhaA at 550.215 kb on - strand, within nhaA at 550.218 kb on - strand, within nhaA at 550.261 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.322 kb on + strand, within nhaA at 550.323 kb on - strand, within nhaA at 550.326 kb on - strand, within nhaA at 550.424 kb on + strand, within nhaA at 550.526 kb on + strand, within nhaA at 550.526 kb on + strand, within nhaA at 550.527 kb on - strand, within nhaA at 550.610 kb on + strand, within nhaA at 550.612 kb on + strand, within nhaA at 550.698 kb on + strand, within nhaA at 550.699 kb on - strand, within nhaA at 550.707 kb on - strand, within nhaA at 550.754 kb on + strand, within nhaA at 550.755 kb on - strand, within nhaA at 550.889 kb on + strand, within nhaA at 550.889 kb on + strand, within nhaA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 548,435 - HEPCGN_09005 0.34 -1.2 548,793 + HEPCGN_09005 0.72 +0.8 548,878 + HEPCGN_09005 0.80 +0.4 548,935 - HEPCGN_09005 0.86 +1.7 548,935 - HEPCGN_09005 0.86 +0.3 548,937 + HEPCGN_09005 0.87 +0.2 548,980 + -0.1 549,057 + +0.7 549,057 + +1.5 549,058 - -0.7 549,063 + +0.1 549,064 - +0.5 549,082 + -2.1 549,083 - +1.4 549,134 + -1.7 549,135 - +0.3 549,141 + -0.7 549,201 - nhaR HEPCGN_09010 0.11 -0.1 549,201 - nhaR HEPCGN_09010 0.11 -0.4 549,264 - nhaR HEPCGN_09010 0.18 -0.3 549,269 + nhaR HEPCGN_09010 0.18 +0.7 549,270 - nhaR HEPCGN_09010 0.19 -0.3 549,356 - nhaR HEPCGN_09010 0.28 +0.7 549,541 - nhaR HEPCGN_09010 0.49 -0.1 549,589 + nhaR HEPCGN_09010 0.54 +0.2 549,589 + nhaR HEPCGN_09010 0.54 +0.8 549,589 + nhaR HEPCGN_09010 0.54 +1.6 549,590 - nhaR HEPCGN_09010 0.54 +0.8 549,652 + nhaR HEPCGN_09010 0.61 -0.5 549,667 - nhaR HEPCGN_09010 0.63 +0.9 549,667 - nhaR HEPCGN_09010 0.63 +0.4 549,670 + nhaR HEPCGN_09010 0.63 +0.5 549,671 - nhaR HEPCGN_09010 0.63 +1.4 549,691 - nhaR HEPCGN_09010 0.65 -0.7 549,743 + nhaR HEPCGN_09010 0.71 -0.1 549,744 - nhaR HEPCGN_09010 0.71 -1.0 549,795 - nhaR HEPCGN_09010 0.77 -0.7 549,917 + -0.1 549,957 - -0.3 549,972 - +1.4 549,987 - +0.4 549,987 - +0.4 550,128 - -0.8 550,160 + +0.2 550,160 + +0.3 550,160 + +3.2 550,160 + -2.1 550,176 + -0.5 550,209 - nhaA HEPCGN_09015 0.12 -2.2 550,214 + nhaA HEPCGN_09015 0.13 -1.7 550,214 + nhaA HEPCGN_09015 0.13 -2.5 550,214 + nhaA HEPCGN_09015 0.13 +1.7 550,215 - nhaA HEPCGN_09015 0.13 +0.7 550,218 - nhaA HEPCGN_09015 0.13 +0.3 550,261 + nhaA HEPCGN_09015 0.17 -1.1 550,322 + nhaA HEPCGN_09015 0.22 +0.7 550,322 + nhaA HEPCGN_09015 0.22 -0.1 550,322 + nhaA HEPCGN_09015 0.22 +0.3 550,322 + nhaA HEPCGN_09015 0.22 -0.2 550,323 - nhaA HEPCGN_09015 0.22 -1.1 550,326 - nhaA HEPCGN_09015 0.22 +1.8 550,424 + nhaA HEPCGN_09015 0.31 +0.3 550,526 + nhaA HEPCGN_09015 0.39 -1.7 550,526 + nhaA HEPCGN_09015 0.39 +0.6 550,527 - nhaA HEPCGN_09015 0.39 -1.5 550,610 + nhaA HEPCGN_09015 0.46 +0.3 550,612 + nhaA HEPCGN_09015 0.47 +0.3 550,698 + nhaA HEPCGN_09015 0.54 -0.6 550,699 - nhaA HEPCGN_09015 0.54 -1.2 550,707 - nhaA HEPCGN_09015 0.55 +0.6 550,754 + nhaA HEPCGN_09015 0.59 -1.3 550,755 - nhaA HEPCGN_09015 0.59 -0.1 550,889 + nhaA HEPCGN_09015 0.70 -0.5 550,889 + nhaA HEPCGN_09015 0.70 +1.2
Or see this region's nucleotide sequence