Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araB and araA are separated by 10 nucleotides araA and araD are separated by 114 nucleotides araD and polB are separated by 74 nucleotides
HEPCGN_08770: araB - ribulokinase, at 493,929 to 495,629
araB
HEPCGN_08775: araA - L-arabinose isomerase, at 495,640 to 497,142
araA
HEPCGN_08780: araD - L-ribulose-5-phosphate 4-epimerase, at 497,257 to 497,952
araD
HEPCGN_08785: polB - DNA polymerase II, at 498,027 to 500,378
polB
Position (kb) 495
496
497
498 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 494.652 kb on - strand, within araB at 494.684 kb on - strand, within araB at 494.797 kb on + strand, within araB at 494.810 kb on + strand, within araB at 494.810 kb on + strand, within araB at 494.810 kb on + strand, within araB at 494.952 kb on + strand, within araB at 494.952 kb on + strand, within araB at 494.952 kb on + strand, within araB at 494.952 kb on + strand, within araB at 495.577 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.627 kb on + strand at 495.658 kb on + strand at 495.658 kb on + strand at 495.659 kb on - strand at 495.674 kb on + strand at 495.695 kb on - strand at 495.999 kb on + strand, within araA at 496.260 kb on + strand, within araA at 496.261 kb on - strand, within araA at 496.336 kb on + strand, within araA at 496.349 kb on - strand, within araA at 496.517 kb on + strand, within araA at 496.632 kb on + strand, within araA at 496.643 kb on - strand, within araA at 496.648 kb on + strand, within araA at 496.648 kb on + strand, within araA at 496.648 kb on + strand, within araA at 496.649 kb on - strand, within araA at 496.649 kb on - strand, within araA at 496.649 kb on - strand, within araA at 496.665 kb on + strand, within araA at 496.666 kb on - strand, within araA at 496.689 kb on + strand, within araA at 496.690 kb on - strand, within araA at 496.860 kb on + strand, within araA at 497.094 kb on + strand at 497.123 kb on - strand at 497.126 kb on - strand at 497.157 kb on + strand at 497.157 kb on + strand at 497.158 kb on - strand at 497.161 kb on + strand at 497.162 kb on - strand at 497.189 kb on + strand at 497.190 kb on - strand at 497.198 kb on + strand at 497.285 kb on + strand at 497.285 kb on + strand at 497.285 kb on + strand at 497.286 kb on - strand at 497.399 kb on - strand, within araD at 497.421 kb on + strand, within araD at 497.422 kb on - strand, within araD at 497.624 kb on - strand, within araD at 497.677 kb on + strand, within araD at 497.677 kb on + strand, within araD at 497.706 kb on - strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.839 kb on + strand, within araD at 497.840 kb on - strand, within araD at 497.840 kb on - strand, within araD at 497.842 kb on - strand, within araD at 497.911 kb on + strand at 497.912 kb on - strand at 497.919 kb on + strand at 497.920 kb on - strand at 497.920 kb on - strand at 497.938 kb on + strand at 497.938 kb on + strand at 497.939 kb on - strand at 497.939 kb on - strand at 497.939 kb on - strand at 497.941 kb on + strand at 497.992 kb on + strand at 497.993 kb on - strand at 497.993 kb on - strand at 497.993 kb on - strand at 497.993 kb on - strand at 498.044 kb on + strand at 498.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 494,652 - araB HEPCGN_08770 0.43 +0.0 494,684 - araB HEPCGN_08770 0.44 -2.2 494,797 + araB HEPCGN_08770 0.51 -1.7 494,810 + araB HEPCGN_08770 0.52 -0.6 494,810 + araB HEPCGN_08770 0.52 -1.4 494,810 + araB HEPCGN_08770 0.52 +0.1 494,952 + araB HEPCGN_08770 0.60 -2.0 494,952 + araB HEPCGN_08770 0.60 -0.5 494,952 + araB HEPCGN_08770 0.60 -1.9 494,952 + araB HEPCGN_08770 0.60 -2.1 495,577 - -3.3 495,626 - -1.0 495,626 - -3.1 495,627 + -1.1 495,658 + -2.9 495,658 + +0.1 495,659 - -5.3 495,674 + -2.0 495,695 - -0.9 495,999 + araA HEPCGN_08775 0.24 -2.6 496,260 + araA HEPCGN_08775 0.41 -0.2 496,261 - araA HEPCGN_08775 0.41 -1.6 496,336 + araA HEPCGN_08775 0.46 -1.2 496,349 - araA HEPCGN_08775 0.47 -0.9 496,517 + araA HEPCGN_08775 0.58 -1.9 496,632 + araA HEPCGN_08775 0.66 -0.7 496,643 - araA HEPCGN_08775 0.67 -1.4 496,648 + araA HEPCGN_08775 0.67 -4.0 496,648 + araA HEPCGN_08775 0.67 -0.7 496,648 + araA HEPCGN_08775 0.67 -2.0 496,649 - araA HEPCGN_08775 0.67 -0.7 496,649 - araA HEPCGN_08775 0.67 -1.0 496,649 - araA HEPCGN_08775 0.67 -0.8 496,665 + araA HEPCGN_08775 0.68 +0.6 496,666 - araA HEPCGN_08775 0.68 -1.4 496,689 + araA HEPCGN_08775 0.70 -4.0 496,690 - araA HEPCGN_08775 0.70 -2.6 496,860 + araA HEPCGN_08775 0.81 -2.3 497,094 + -1.0 497,123 - -1.9 497,126 - -2.8 497,157 + -0.2 497,157 + -1.4 497,158 - -4.2 497,161 + -1.1 497,162 - -4.0 497,189 + -1.6 497,190 - -2.5 497,198 + +0.1 497,285 + -4.7 497,285 + -2.5 497,285 + -2.6 497,286 - -2.7 497,399 - araD HEPCGN_08780 0.20 -2.7 497,421 + araD HEPCGN_08780 0.24 -3.9 497,422 - araD HEPCGN_08780 0.24 +1.8 497,624 - araD HEPCGN_08780 0.53 -3.8 497,677 + araD HEPCGN_08780 0.60 -3.1 497,677 + araD HEPCGN_08780 0.60 -0.4 497,706 - araD HEPCGN_08780 0.65 -4.4 497,839 + araD HEPCGN_08780 0.84 -3.0 497,839 + araD HEPCGN_08780 0.84 -3.2 497,839 + araD HEPCGN_08780 0.84 -2.5 497,839 + araD HEPCGN_08780 0.84 -2.3 497,839 + araD HEPCGN_08780 0.84 -1.9 497,839 + araD HEPCGN_08780 0.84 -3.3 497,839 + araD HEPCGN_08780 0.84 -4.2 497,839 + araD HEPCGN_08780 0.84 -3.9 497,840 - araD HEPCGN_08780 0.84 -3.5 497,840 - araD HEPCGN_08780 0.84 -1.5 497,842 - araD HEPCGN_08780 0.84 -5.6 497,911 + -4.2 497,912 - -2.4 497,919 + -5.5 497,920 - -0.4 497,920 - +0.3 497,938 + -0.6 497,938 + -4.2 497,939 - -3.4 497,939 - -4.5 497,939 - -2.3 497,941 + -4.2 497,992 + -0.2 497,993 - -0.2 497,993 - +0.5 497,993 - -0.2 497,993 - +0.3 498,044 + +0.2 498,129 - +0.0
Or see this region's nucleotide sequence