Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06630

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcnoX and fetB are separated by 179 nucleotidesfetB and fetA overlap by 14 nucleotidesfetA and qmcA are separated by 145 nucleotides HEPCGN_06615: cnoX - chaperedoxin, at 39,450 to 40,304 cnoX HEPCGN_06625: fetB - iron export ABC transporter permease subunit FetB, at 40,484 to 41,263 fetB HEPCGN_06630: fetA - iron ABC transporter ATP-binding protein FetA, at 41,250 to 41,927 fetA HEPCGN_06635: qmcA - Protein QmcA, at 42,073 to 42,990 qmcA Position (kb) 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1at 40.300 kb on - strandat 40.336 kb on - strandat 40.454 kb on + strandat 40.455 kb on - strandat 40.485 kb on + strandat 40.537 kb on + strandat 40.538 kb on - strandat 40.548 kb on - strandat 40.552 kb on - strandat 40.561 kb on + strandat 40.595 kb on - strand, within fetBat 40.595 kb on - strand, within fetBat 40.618 kb on + strand, within fetBat 40.618 kb on + strand, within fetBat 40.619 kb on - strand, within fetBat 40.649 kb on + strand, within fetBat 40.839 kb on + strand, within fetBat 40.948 kb on + strand, within fetBat 40.966 kb on + strand, within fetBat 40.967 kb on - strand, within fetBat 41.047 kb on + strand, within fetBat 41.249 kb on - strandat 41.325 kb on - strand, within fetAat 41.381 kb on - strand, within fetAat 41.415 kb on - strand, within fetAat 41.636 kb on - strand, within fetAat 41.675 kb on - strand, within fetAat 41.692 kb on + strand, within fetAat 41.817 kb on + strand, within fetAat 41.817 kb on + strand, within fetAat 41.855 kb on + strand, within fetAat 42.090 kb on + strandat 42.206 kb on + strand, within qmcAat 42.415 kb on - strand, within qmcAat 42.496 kb on - strand, within qmcAat 42.577 kb on - strand, within qmcAat 42.625 kb on + strand, within qmcAat 42.625 kb on + strand, within qmcAat 42.625 kb on + strand, within qmcAat 42.625 kb on + strand, within qmcAat 42.626 kb on - strand, within qmcAat 42.731 kb on + strand, within qmcAat 42.732 kb on - strand, within qmcAat 42.814 kb on - strand, within qmcAat 42.814 kb on - strand, within qmcAat 42.814 kb on - strand, within qmcAat 42.847 kb on + strand, within qmcAat 42.848 kb on - strand, within qmcAat 42.848 kb on - strand, within qmcAat 42.860 kb on + strand, within qmcAat 42.861 kb on - strand, within qmcA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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40,300 - -3.0
40,336 - -2.5
40,454 + +1.0
40,455 - +0.9
40,485 + -0.1
40,537 + -0.4
40,538 - +0.7
40,548 - +0.5
40,552 - +0.5
40,561 + +0.2
40,595 - fetB HEPCGN_06625 0.14 +0.5
40,595 - fetB HEPCGN_06625 0.14 +0.4
40,618 + fetB HEPCGN_06625 0.17 -1.4
40,618 + fetB HEPCGN_06625 0.17 +0.2
40,619 - fetB HEPCGN_06625 0.17 +0.4
40,649 + fetB HEPCGN_06625 0.21 +0.4
40,839 + fetB HEPCGN_06625 0.46 -0.6
40,948 + fetB HEPCGN_06625 0.59 -0.9
40,966 + fetB HEPCGN_06625 0.62 +0.1
40,967 - fetB HEPCGN_06625 0.62 +0.4
41,047 + fetB HEPCGN_06625 0.72 +1.7
41,249 - +0.2
41,325 - fetA HEPCGN_06630 0.11 -0.5
41,381 - fetA HEPCGN_06630 0.19 -1.6
41,415 - fetA HEPCGN_06630 0.24 -0.6
41,636 - fetA HEPCGN_06630 0.57 +0.4
41,675 - fetA HEPCGN_06630 0.63 -1.7
41,692 + fetA HEPCGN_06630 0.65 -2.5
41,817 + fetA HEPCGN_06630 0.84 +1.3
41,817 + fetA HEPCGN_06630 0.84 -0.5
41,855 + fetA HEPCGN_06630 0.89 +1.4
42,090 + -0.9
42,206 + qmcA HEPCGN_06635 0.14 +1.6
42,415 - qmcA HEPCGN_06635 0.37 -1.0
42,496 - qmcA HEPCGN_06635 0.46 +0.9
42,577 - qmcA HEPCGN_06635 0.55 +0.8
42,625 + qmcA HEPCGN_06635 0.60 +0.2
42,625 + qmcA HEPCGN_06635 0.60 +1.0
42,625 + qmcA HEPCGN_06635 0.60 +0.3
42,625 + qmcA HEPCGN_06635 0.60 +1.1
42,626 - qmcA HEPCGN_06635 0.60 +0.2
42,731 + qmcA HEPCGN_06635 0.72 +1.3
42,732 - qmcA HEPCGN_06635 0.72 +0.1
42,814 - qmcA HEPCGN_06635 0.81 +0.1
42,814 - qmcA HEPCGN_06635 0.81 -0.2
42,814 - qmcA HEPCGN_06635 0.81 -0.3
42,847 + qmcA HEPCGN_06635 0.84 +0.4
42,848 - qmcA HEPCGN_06635 0.84 +1.4
42,848 - qmcA HEPCGN_06635 0.84 +0.4
42,860 + qmcA HEPCGN_06635 0.86 -0.0
42,861 - qmcA HEPCGN_06635 0.86 +0.6

Or see this region's nucleotide sequence