Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliP and fliO overlap by 1 nucleotides fliO and fliN are separated by 2 nucleotides fliN and fliM overlap by 4 nucleotides fliM and fliL are separated by 4 nucleotides fliL and fliK are separated by 104 nucleotides
HEPCGN_04025: fliP - flagellar type III secretion system pore protein FliP, at 706,747 to 707,484
fliP
HEPCGN_04030: fliO - flagellar type III secretion system protein FliO, at 707,484 to 707,849
fliO
HEPCGN_04035: fliN - flagellar motor switch protein FliN, at 707,852 to 708,265
fliN
HEPCGN_04040: fliM - flagellar motor switch protein FliM, at 708,262 to 709,266
fliM
HEPCGN_04045: fliL - flagellar basal body-associated protein FliL, at 709,271 to 709,735
fliL
HEPCGN_04050: fliK - flagellar hook length control protein FliK, at 709,840 to 710,967
fliK
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.280 kb on + strand, within fliP at 707.280 kb on + strand, within fliP at 707.393 kb on - strand, within fliP at 707.576 kb on + strand, within fliO at 707.834 kb on + strand at 707.834 kb on + strand at 707.913 kb on + strand, within fliN at 707.951 kb on + strand, within fliN at 708.250 kb on + strand at 708.250 kb on + strand at 708.250 kb on + strand at 708.293 kb on - strand at 708.316 kb on + strand at 708.618 kb on + strand, within fliM at 708.621 kb on + strand, within fliM at 708.772 kb on - strand, within fliM at 708.772 kb on - strand, within fliM at 708.954 kb on + strand, within fliM at 708.954 kb on + strand, within fliM at 709.002 kb on - strand, within fliM at 709.095 kb on + strand, within fliM at 709.254 kb on + strand at 709.282 kb on + strand at 709.293 kb on + strand at 709.294 kb on - strand at 709.458 kb on + strand, within fliL at 709.513 kb on + strand, within fliL at 709.515 kb on + strand, within fliL at 709.515 kb on + strand, within fliL at 709.516 kb on - strand, within fliL at 709.516 kb on - strand, within fliL at 709.516 kb on - strand, within fliL at 709.555 kb on + strand, within fliL at 709.567 kb on - strand, within fliL at 709.767 kb on - strand at 709.908 kb on + strand at 710.130 kb on + strand, within fliK at 710.130 kb on + strand, within fliK
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 707,280 + fliP HEPCGN_04025 0.72 +0.4 707,280 + fliP HEPCGN_04025 0.72 -0.0 707,393 - fliP HEPCGN_04025 0.88 +0.1 707,576 + fliO HEPCGN_04030 0.25 -0.2 707,834 + -0.1 707,834 + -0.4 707,913 + fliN HEPCGN_04035 0.15 +0.6 707,951 + fliN HEPCGN_04035 0.24 -2.6 708,250 + +0.0 708,250 + +0.6 708,250 + -1.5 708,293 - +0.5 708,316 + +1.6 708,618 + fliM HEPCGN_04040 0.35 -1.6 708,621 + fliM HEPCGN_04040 0.36 +0.2 708,772 - fliM HEPCGN_04040 0.51 -0.2 708,772 - fliM HEPCGN_04040 0.51 +0.7 708,954 + fliM HEPCGN_04040 0.69 +1.0 708,954 + fliM HEPCGN_04040 0.69 -2.2 709,002 - fliM HEPCGN_04040 0.74 +0.0 709,095 + fliM HEPCGN_04040 0.83 +0.9 709,254 + -0.7 709,282 + -1.3 709,293 + +0.6 709,294 - -0.4 709,458 + fliL HEPCGN_04045 0.40 -1.6 709,513 + fliL HEPCGN_04045 0.52 +0.1 709,515 + fliL HEPCGN_04045 0.52 +1.4 709,515 + fliL HEPCGN_04045 0.52 +0.1 709,516 - fliL HEPCGN_04045 0.53 +2.5 709,516 - fliL HEPCGN_04045 0.53 -0.6 709,516 - fliL HEPCGN_04045 0.53 -0.4 709,555 + fliL HEPCGN_04045 0.61 +0.3 709,567 - fliL HEPCGN_04045 0.64 +0.2 709,767 - +0.7 709,908 + +0.2 710,130 + fliK HEPCGN_04050 0.26 +1.3 710,130 + fliK HEPCGN_04050 0.26 -0.5
Or see this region's nucleotide sequence