Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbl and Asn_trna are separated by 37 nucleotides Asn_trna and yeeO are separated by 193 nucleotides yeeO and Asn_trna are separated by 100 nucleotides Asn_trna and ycdB are separated by 440 nucleotides
HEPCGN_03490: cbl - HTH-type transcriptional regulator Cbl, at 602,323 to 603,273
cbl
HEPCGN_03495: Asn_trna - tRNA-Asn(gtt), at 603,311 to 603,386
_trna
HEPCGN_03500: yeeO - toxic metabolite efflux MATE transporter YeeO, at 603,580 to 605,034
yeeO
HEPCGN_03505: Asn_trna - tRNA-Asn(gtt), at 605,135 to 605,210
_trna
HEPCGN_03510: ycdB - putative transcriptional regulatory protein YcdB, at 605,651 to 606,367
ycdB
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 602.584 kb on - strand, within cbl at 602.592 kb on + strand, within cbl at 602.639 kb on - strand, within cbl at 602.640 kb on + strand, within cbl at 602.640 kb on + strand, within cbl at 602.641 kb on - strand, within cbl at 602.700 kb on - strand, within cbl at 602.908 kb on - strand, within cbl at 602.912 kb on - strand, within cbl at 602.979 kb on + strand, within cbl at 602.984 kb on + strand, within cbl at 602.987 kb on + strand, within cbl at 603.013 kb on - strand, within cbl at 603.019 kb on + strand, within cbl at 603.047 kb on + strand, within cbl at 603.047 kb on + strand, within cbl at 603.124 kb on - strand, within cbl at 603.165 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.170 kb on - strand, within cbl at 603.170 kb on - strand, within cbl at 603.170 kb on - strand, within cbl at 603.289 kb on - strand at 603.599 kb on + strand at 603.691 kb on - strand at 603.841 kb on - strand, within yeeO at 603.844 kb on - strand, within yeeO at 603.844 kb on - strand, within yeeO at 603.854 kb on + strand, within yeeO at 603.854 kb on + strand, within yeeO at 604.057 kb on + strand, within yeeO at 604.080 kb on + strand, within yeeO at 604.176 kb on - strand, within yeeO at 604.252 kb on - strand, within yeeO at 604.497 kb on + strand, within yeeO at 604.533 kb on + strand, within yeeO at 604.543 kb on - strand, within yeeO at 604.737 kb on - strand, within yeeO at 604.741 kb on - strand, within yeeO at 604.741 kb on - strand, within yeeO at 604.741 kb on - strand, within yeeO at 604.858 kb on + strand, within yeeO at 605.033 kb on - strand at 605.273 kb on + strand at 605.401 kb on + strand at 605.406 kb on + strand at 605.431 kb on + strand at 605.442 kb on + strand at 605.442 kb on + strand at 605.442 kb on + strand at 605.649 kb on - strand at 605.649 kb on - strand at 605.833 kb on + strand, within ycdB at 605.870 kb on - strand, within ycdB at 605.982 kb on + strand, within ycdB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 602,584 - cbl HEPCGN_03490 0.27 -1.5 602,592 + cbl HEPCGN_03490 0.28 -2.6 602,639 - cbl HEPCGN_03490 0.33 +0.5 602,640 + cbl HEPCGN_03490 0.33 +0.7 602,640 + cbl HEPCGN_03490 0.33 +0.2 602,641 - cbl HEPCGN_03490 0.33 -0.1 602,700 - cbl HEPCGN_03490 0.40 -0.6 602,908 - cbl HEPCGN_03490 0.62 +1.0 602,912 - cbl HEPCGN_03490 0.62 -0.8 602,979 + cbl HEPCGN_03490 0.69 -0.7 602,984 + cbl HEPCGN_03490 0.70 +0.5 602,987 + cbl HEPCGN_03490 0.70 -3.4 603,013 - cbl HEPCGN_03490 0.73 +1.3 603,019 + cbl HEPCGN_03490 0.73 +0.5 603,047 + cbl HEPCGN_03490 0.76 -0.5 603,047 + cbl HEPCGN_03490 0.76 -3.4 603,124 - cbl HEPCGN_03490 0.84 +0.3 603,165 + cbl HEPCGN_03490 0.89 +1.2 603,169 + cbl HEPCGN_03490 0.89 -1.0 603,169 + cbl HEPCGN_03490 0.89 -0.5 603,169 + cbl HEPCGN_03490 0.89 +1.5 603,169 + cbl HEPCGN_03490 0.89 +0.1 603,169 + cbl HEPCGN_03490 0.89 +0.4 603,170 - cbl HEPCGN_03490 0.89 -0.8 603,170 - cbl HEPCGN_03490 0.89 +0.3 603,170 - cbl HEPCGN_03490 0.89 -0.4 603,289 - -1.3 603,599 + +0.9 603,691 - +1.0 603,841 - yeeO HEPCGN_03500 0.18 -0.1 603,844 - yeeO HEPCGN_03500 0.18 -0.0 603,844 - yeeO HEPCGN_03500 0.18 +1.1 603,854 + yeeO HEPCGN_03500 0.19 +0.5 603,854 + yeeO HEPCGN_03500 0.19 +0.8 604,057 + yeeO HEPCGN_03500 0.33 +1.7 604,080 + yeeO HEPCGN_03500 0.34 -0.5 604,176 - yeeO HEPCGN_03500 0.41 +1.1 604,252 - yeeO HEPCGN_03500 0.46 -0.2 604,497 + yeeO HEPCGN_03500 0.63 -0.3 604,533 + yeeO HEPCGN_03500 0.65 +0.6 604,543 - yeeO HEPCGN_03500 0.66 -0.6 604,737 - yeeO HEPCGN_03500 0.80 -0.0 604,741 - yeeO HEPCGN_03500 0.80 -0.6 604,741 - yeeO HEPCGN_03500 0.80 +0.1 604,741 - yeeO HEPCGN_03500 0.80 +0.4 604,858 + yeeO HEPCGN_03500 0.88 -0.0 605,033 - -0.1 605,273 + +0.6 605,401 + -0.6 605,406 + -0.1 605,431 + +0.2 605,442 + +0.0 605,442 + +0.5 605,442 + +0.9 605,649 - +0.2 605,649 - -0.7 605,833 + ycdB HEPCGN_03510 0.25 +0.2 605,870 - ycdB HEPCGN_03510 0.31 +0.6 605,982 + ycdB HEPCGN_03510 0.46 -0.8
Or see this region's nucleotide sequence