Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt abrB and HEPCGN_01230 are separated by 179 nucleotides HEPCGN_01230 and HEPCGN_01235 are separated by 263 nucleotides HEPCGN_01235 and HEPCGN_01240 are separated by 12 nucleotides
HEPCGN_01225: abrB - Putative regulator AbrB, at 171,625 to 172,671
abrB
HEPCGN_01230: HEPCGN_01230 - FadR family transcriptional regulator, at 172,851 to 173,564
_01230
HEPCGN_01235: HEPCGN_01235 - dimethylmenaquinone methyltransferase, at 173,828 to 174,514
_01235
HEPCGN_01240: HEPCGN_01240 - alcohol dehydrogenase, at 174,527 to 175,540
_01240
Position (kb) 172
173
174 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 171.920 kb on - strand, within abrB at 171.965 kb on + strand, within abrB at 171.965 kb on + strand, within abrB at 171.965 kb on + strand, within abrB at 171.965 kb on + strand, within abrB at 171.966 kb on - strand, within abrB at 172.072 kb on + strand, within abrB at 172.116 kb on + strand, within abrB at 172.242 kb on - strand, within abrB at 172.242 kb on - strand, within abrB at 172.242 kb on - strand, within abrB at 172.267 kb on - strand, within abrB at 172.356 kb on + strand, within abrB at 172.357 kb on - strand, within abrB at 172.413 kb on + strand, within abrB at 172.417 kb on + strand, within abrB at 172.417 kb on + strand, within abrB at 172.603 kb on + strand at 172.604 kb on - strand at 172.604 kb on - strand at 172.645 kb on + strand at 172.646 kb on - strand at 172.687 kb on + strand at 172.687 kb on + strand at 172.783 kb on - strand at 172.785 kb on + strand at 172.785 kb on + strand at 172.786 kb on - strand at 172.790 kb on - strand at 172.790 kb on - strand at 172.812 kb on + strand at 172.849 kb on + strand at 172.850 kb on - strand at 173.050 kb on - strand, within HEPCGN_01230 at 173.050 kb on - strand, within HEPCGN_01230 at 173.062 kb on - strand, within HEPCGN_01230 at 173.070 kb on - strand, within HEPCGN_01230 at 173.130 kb on - strand, within HEPCGN_01230 at 173.130 kb on - strand, within HEPCGN_01230 at 173.241 kb on + strand, within HEPCGN_01230 at 173.254 kb on - strand, within HEPCGN_01230 at 173.254 kb on - strand, within HEPCGN_01230 at 173.277 kb on + strand, within HEPCGN_01230 at 173.415 kb on - strand, within HEPCGN_01230 at 173.507 kb on + strand at 173.663 kb on - strand at 173.704 kb on + strand at 173.704 kb on + strand at 173.879 kb on - strand at 173.915 kb on + strand, within HEPCGN_01235 at 173.917 kb on + strand, within HEPCGN_01235 at 173.918 kb on - strand, within HEPCGN_01235 at 173.962 kb on + strand, within HEPCGN_01235 at 173.962 kb on + strand, within HEPCGN_01235 at 174.105 kb on - strand, within HEPCGN_01235 at 174.132 kb on - strand, within HEPCGN_01235 at 174.263 kb on + strand, within HEPCGN_01235 at 174.263 kb on + strand, within HEPCGN_01235 at 174.263 kb on + strand, within HEPCGN_01235 at 174.313 kb on + strand, within HEPCGN_01235 at 174.382 kb on + strand, within HEPCGN_01235 at 174.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 171,920 - abrB HEPCGN_01225 0.28 -0.5 171,965 + abrB HEPCGN_01225 0.32 +0.1 171,965 + abrB HEPCGN_01225 0.32 +0.8 171,965 + abrB HEPCGN_01225 0.32 +1.3 171,965 + abrB HEPCGN_01225 0.32 -0.3 171,966 - abrB HEPCGN_01225 0.33 +1.3 172,072 + abrB HEPCGN_01225 0.43 +0.0 172,116 + abrB HEPCGN_01225 0.47 -4.4 172,242 - abrB HEPCGN_01225 0.59 -2.3 172,242 - abrB HEPCGN_01225 0.59 +0.9 172,242 - abrB HEPCGN_01225 0.59 -0.3 172,267 - abrB HEPCGN_01225 0.61 -0.5 172,356 + abrB HEPCGN_01225 0.70 +0.6 172,357 - abrB HEPCGN_01225 0.70 -0.9 172,413 + abrB HEPCGN_01225 0.75 +0.8 172,417 + abrB HEPCGN_01225 0.76 +0.8 172,417 + abrB HEPCGN_01225 0.76 -0.1 172,603 + +0.1 172,604 - +2.3 172,604 - -1.3 172,645 + +0.3 172,646 - -0.4 172,687 + -0.9 172,687 + +0.5 172,783 - +0.5 172,785 + -0.6 172,785 + -0.6 172,786 - +0.0 172,790 - -0.7 172,790 - -0.1 172,812 + -0.2 172,849 + -4.4 172,850 - +0.5 173,050 - HEPCGN_01230 0.28 -0.7 173,050 - HEPCGN_01230 0.28 +0.4 173,062 - HEPCGN_01230 0.30 -0.5 173,070 - HEPCGN_01230 0.31 -0.5 173,130 - HEPCGN_01230 0.39 +0.8 173,130 - HEPCGN_01230 0.39 -1.1 173,241 + HEPCGN_01230 0.55 -0.5 173,254 - HEPCGN_01230 0.56 -0.7 173,254 - HEPCGN_01230 0.56 -0.7 173,277 + HEPCGN_01230 0.60 -1.5 173,415 - HEPCGN_01230 0.79 -0.5 173,507 + +1.0 173,663 - +0.4 173,704 + -0.3 173,704 + -0.3 173,879 - -1.1 173,915 + HEPCGN_01235 0.13 -0.1 173,917 + HEPCGN_01235 0.13 -1.2 173,918 - HEPCGN_01235 0.13 +0.3 173,962 + HEPCGN_01235 0.20 +0.2 173,962 + HEPCGN_01235 0.20 +0.2 174,105 - HEPCGN_01235 0.40 -1.2 174,132 - HEPCGN_01235 0.44 +0.0 174,263 + HEPCGN_01235 0.63 +0.6 174,263 + HEPCGN_01235 0.63 -0.3 174,263 + HEPCGN_01235 0.63 +0.4 174,313 + HEPCGN_01235 0.71 -1.4 174,382 + HEPCGN_01235 0.81 -0.6 174,507 + -0.6
Or see this region's nucleotide sequence