Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00080

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00075 and HEPCGN_00080 are separated by 192 nucleotidesHEPCGN_00080 and HEPCGN_00085 are separated by 155 nucleotidesHEPCGN_00085 and HEPCGN_00090 are separated by 62 nucleotidesHEPCGN_00090 and rusA are separated by 133 nucleotides HEPCGN_00075: HEPCGN_00075 - DUF1722 domain-containing protein, at 3,224 to 4,183 _00075 HEPCGN_00080: HEPCGN_00080 - Outer membrane lipoprotein Blc, at 4,376 to 4,900 _00080 HEPCGN_00085: HEPCGN_00085 - antitermination protein, at 5,056 to 5,433 _00085 HEPCGN_00090: HEPCGN_00090 - Orf33, orf151, orf56, orf96, rus, orf45, orf8, orf127, and nmpC genes, at 5,496 to 5,522 _00090 HEPCGN_00095: rusA - crossover junction endodeoxyribonuclease RusA, at 5,656 to 6,018 rusA Position (kb) 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 3.415 kb on - strand, within HEPCGN_00075at 3.434 kb on + strand, within HEPCGN_00075at 3.435 kb on - strand, within HEPCGN_00075at 3.435 kb on - strand, within HEPCGN_00075at 3.610 kb on + strand, within HEPCGN_00075at 3.630 kb on - strand, within HEPCGN_00075at 3.660 kb on + strand, within HEPCGN_00075at 3.831 kb on + strand, within HEPCGN_00075at 3.832 kb on - strand, within HEPCGN_00075at 3.912 kb on + strand, within HEPCGN_00075at 3.913 kb on - strand, within HEPCGN_00075at 3.913 kb on - strand, within HEPCGN_00075at 3.913 kb on - strand, within HEPCGN_00075at 3.913 kb on - strand, within HEPCGN_00075at 3.980 kb on + strand, within HEPCGN_00075at 3.980 kb on + strand, within HEPCGN_00075at 3.980 kb on + strand, within HEPCGN_00075at 4.011 kb on - strand, within HEPCGN_00075at 4.011 kb on - strand, within HEPCGN_00075at 4.055 kb on + strand, within HEPCGN_00075at 4.056 kb on - strand, within HEPCGN_00075at 4.184 kb on - strandat 4.214 kb on + strandat 4.224 kb on - strandat 4.283 kb on - strandat 4.288 kb on + strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.297 kb on - strandat 4.340 kb on + strandat 4.363 kb on + strandat 4.423 kb on + strandat 4.424 kb on - strandat 4.425 kb on + strandat 4.432 kb on + strand, within HEPCGN_00080at 4.451 kb on - strand, within HEPCGN_00080at 4.468 kb on + strand, within HEPCGN_00080at 4.491 kb on - strand, within HEPCGN_00080at 4.512 kb on + strand, within HEPCGN_00080at 4.600 kb on + strand, within HEPCGN_00080at 4.601 kb on - strand, within HEPCGN_00080at 4.661 kb on - strand, within HEPCGN_00080at 4.669 kb on + strand, within HEPCGN_00080at 4.672 kb on + strand, within HEPCGN_00080at 4.712 kb on + strand, within HEPCGN_00080at 4.713 kb on - strand, within HEPCGN_00080at 4.750 kb on + strand, within HEPCGN_00080at 4.750 kb on + strand, within HEPCGN_00080at 4.750 kb on + strand, within HEPCGN_00080at 4.751 kb on - strand, within HEPCGN_00080at 4.751 kb on - strand, within HEPCGN_00080at 4.784 kb on + strand, within HEPCGN_00080at 4.785 kb on - strand, within HEPCGN_00080at 4.838 kb on + strand, within HEPCGN_00080at 4.924 kb on - strandat 4.958 kb on - strandat 5.025 kb on - strandat 5.120 kb on - strand, within HEPCGN_00085at 5.210 kb on + strand, within HEPCGN_00085at 5.211 kb on - strand, within HEPCGN_00085at 5.211 kb on - strand, within HEPCGN_00085at 5.211 kb on - strand, within HEPCGN_00085at 5.213 kb on + strand, within HEPCGN_00085at 5.214 kb on - strand, within HEPCGN_00085at 5.382 kb on + strand, within HEPCGN_00085at 5.471 kb on - strandat 5.497 kb on + strandat 5.562 kb on - strandat 5.598 kb on + strandat 5.600 kb on + strandat 5.600 kb on + strandat 5.601 kb on - strandat 5.601 kb on - strandat 5.769 kb on + strand, within rusAat 5.769 kb on + strand, within rusAat 5.770 kb on - strand, within rusAat 5.770 kb on - strand, within rusAat 5.862 kb on + strand, within rusAat 5.862 kb on + strand, within rusAat 5.863 kb on - strand, within rusA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,415 - HEPCGN_00075 0.20 +1.4
3,434 + HEPCGN_00075 0.22 -2.0
3,435 - HEPCGN_00075 0.22 -0.6
3,435 - HEPCGN_00075 0.22 -0.2
3,610 + HEPCGN_00075 0.40 +0.4
3,630 - HEPCGN_00075 0.42 +0.6
3,660 + HEPCGN_00075 0.45 -0.3
3,831 + HEPCGN_00075 0.63 -0.9
3,832 - HEPCGN_00075 0.63 -0.2
3,912 + HEPCGN_00075 0.72 +0.4
3,913 - HEPCGN_00075 0.72 -0.4
3,913 - HEPCGN_00075 0.72 +1.2
3,913 - HEPCGN_00075 0.72 -0.8
3,913 - HEPCGN_00075 0.72 +0.1
3,980 + HEPCGN_00075 0.79 +1.5
3,980 + HEPCGN_00075 0.79 -0.7
3,980 + HEPCGN_00075 0.79 -1.8
4,011 - HEPCGN_00075 0.82 -0.5
4,011 - HEPCGN_00075 0.82 -0.9
4,055 + HEPCGN_00075 0.87 +0.7
4,056 - HEPCGN_00075 0.87 -0.5
4,184 - +0.1
4,214 + +1.5
4,224 - +0.1
4,283 - +0.5
4,288 + -0.2
4,294 - +0.8
4,294 - +0.2
4,294 - +0.8
4,297 - +0.5
4,340 + +1.2
4,363 + +0.7
4,423 + -0.3
4,424 - +0.2
4,425 + +0.2
4,432 + HEPCGN_00080 0.11 -1.0
4,451 - HEPCGN_00080 0.14 -0.6
4,468 + HEPCGN_00080 0.18 +1.8
4,491 - HEPCGN_00080 0.22 +0.2
4,512 + HEPCGN_00080 0.26 -1.0
4,600 + HEPCGN_00080 0.43 -0.4
4,601 - HEPCGN_00080 0.43 +1.3
4,661 - HEPCGN_00080 0.54 +1.1
4,669 + HEPCGN_00080 0.56 -0.4
4,672 + HEPCGN_00080 0.56 +0.9
4,712 + HEPCGN_00080 0.64 +0.6
4,713 - HEPCGN_00080 0.64 +1.4
4,750 + HEPCGN_00080 0.71 +0.2
4,750 + HEPCGN_00080 0.71 +0.5
4,750 + HEPCGN_00080 0.71 +0.7
4,751 - HEPCGN_00080 0.71 +0.0
4,751 - HEPCGN_00080 0.71 +0.1
4,784 + HEPCGN_00080 0.78 +0.1
4,785 - HEPCGN_00080 0.78 -0.5
4,838 + HEPCGN_00080 0.88 +0.2
4,924 - +0.3
4,958 - +0.9
5,025 - -0.9
5,120 - HEPCGN_00085 0.17 +0.9
5,210 + HEPCGN_00085 0.41 -0.1
5,211 - HEPCGN_00085 0.41 -0.3
5,211 - HEPCGN_00085 0.41 +0.3
5,211 - HEPCGN_00085 0.41 +0.2
5,213 + HEPCGN_00085 0.42 +0.6
5,214 - HEPCGN_00085 0.42 +0.5
5,382 + HEPCGN_00085 0.86 +0.3
5,471 - +0.6
5,497 + -0.3
5,562 - -2.7
5,598 + -1.3
5,600 + -0.3
5,600 + +0.2
5,601 - +1.6
5,601 - +0.7
5,769 + rusA HEPCGN_00095 0.31 -0.7
5,769 + rusA HEPCGN_00095 0.31 +0.6
5,770 - rusA HEPCGN_00095 0.31 +1.5
5,770 - rusA HEPCGN_00095 0.31 +1.0
5,862 + rusA HEPCGN_00095 0.57 -0.2
5,862 + rusA HEPCGN_00095 0.57 +0.2
5,863 - rusA HEPCGN_00095 0.57 -0.1

Or see this region's nucleotide sequence