Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjP and yjjB overlap by 10 nucleotides yjjB and dnaT are separated by 106 nucleotides dnaT and dnaC are separated by 2 nucleotides dnaC and yjjA are separated by 48 nucleotides
NOLOHH_03660: yjjP - putative succinate transporter subunit YjjP, at 648,278 to 649,048
yjjP
NOLOHH_03665: yjjB - threonine/serine exporter, at 649,039 to 649,512
yjjB
NOLOHH_03670: dnaT - primosomal protein DnaT, at 649,619 to 650,158
dnaT
NOLOHH_03675: dnaC - DNA replication protein DnaC, at 650,161 to 650,898
dnaC
NOLOHH_03680: yjjA - Uncharacterized protein YjjA, at 650,947 to 651,441
yjjA
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 648.634 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.734 kb on + strand, within yjjP at 648.734 kb on + strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.850 kb on + strand, within yjjP at 648.850 kb on + strand, within yjjP at 648.909 kb on + strand, within yjjP at 648.909 kb on + strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.931 kb on + strand, within yjjP at 649.077 kb on + strand at 649.077 kb on + strand at 649.078 kb on - strand at 649.078 kb on - strand at 649.193 kb on + strand, within yjjB at 649.193 kb on + strand, within yjjB at 649.194 kb on - strand, within yjjB at 649.213 kb on - strand, within yjjB at 649.260 kb on + strand, within yjjB at 649.280 kb on - strand, within yjjB at 649.481 kb on + strand at 649.566 kb on + strand at 649.569 kb on + strand at 649.569 kb on + strand at 649.571 kb on + strand at 649.604 kb on + strand at 649.618 kb on + strand at 650.896 kb on + strand at 650.896 kb on + strand at 650.897 kb on - strand at 650.897 kb on - strand at 650.916 kb on - strand at 650.916 kb on - strand at 650.917 kb on + strand at 650.917 kb on + strand at 650.918 kb on - strand at 650.942 kb on + strand at 650.942 kb on + strand at 650.961 kb on + strand at 651.113 kb on + strand, within yjjA at 651.117 kb on + strand, within yjjA at 651.117 kb on + strand, within yjjA at 651.117 kb on + strand, within yjjA at 651.118 kb on - strand, within yjjA at 651.146 kb on + strand, within yjjA at 651.156 kb on + strand, within yjjA at 651.156 kb on + strand, within yjjA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 648,634 - yjjP NOLOHH_03660 0.46 -3.0 648,634 - yjjP NOLOHH_03660 0.46 +0.4 648,634 - yjjP NOLOHH_03660 0.46 +0.2 648,734 + yjjP NOLOHH_03660 0.59 +0.8 648,734 + yjjP NOLOHH_03660 0.59 -1.6 648,735 - yjjP NOLOHH_03660 0.59 -0.1 648,735 - yjjP NOLOHH_03660 0.59 -1.6 648,735 - yjjP NOLOHH_03660 0.59 +0.5 648,735 - yjjP NOLOHH_03660 0.59 -1.1 648,735 - yjjP NOLOHH_03660 0.59 +0.0 648,735 - yjjP NOLOHH_03660 0.59 +0.9 648,735 - yjjP NOLOHH_03660 0.59 +0.6 648,735 - yjjP NOLOHH_03660 0.59 -0.8 648,735 - yjjP NOLOHH_03660 0.59 -2.8 648,735 - yjjP NOLOHH_03660 0.59 -0.4 648,735 - yjjP NOLOHH_03660 0.59 +0.7 648,735 - yjjP NOLOHH_03660 0.59 -2.5 648,850 + yjjP NOLOHH_03660 0.74 +0.6 648,850 + yjjP NOLOHH_03660 0.74 +1.6 648,909 + yjjP NOLOHH_03660 0.82 +1.7 648,909 + yjjP NOLOHH_03660 0.82 -0.6 648,910 - yjjP NOLOHH_03660 0.82 +0.4 648,910 - yjjP NOLOHH_03660 0.82 -1.1 648,910 - yjjP NOLOHH_03660 0.82 -3.9 648,910 - yjjP NOLOHH_03660 0.82 +1.1 648,931 + yjjP NOLOHH_03660 0.85 +0.2 649,077 + -1.1 649,077 + +0.5 649,078 - -1.6 649,078 - -0.5 649,193 + yjjB NOLOHH_03665 0.32 +0.3 649,193 + yjjB NOLOHH_03665 0.32 -3.9 649,194 - yjjB NOLOHH_03665 0.33 -0.8 649,213 - yjjB NOLOHH_03665 0.37 +0.4 649,260 + yjjB NOLOHH_03665 0.47 +0.7 649,280 - yjjB NOLOHH_03665 0.51 +1.2 649,481 + -0.9 649,566 + +0.8 649,569 + -1.3 649,569 + -0.2 649,571 + -0.6 649,604 + +1.2 649,618 + -2.0 650,896 + +1.2 650,896 + -0.3 650,897 - +0.6 650,897 - -4.0 650,916 - +0.7 650,916 - +0.0 650,917 + +0.6 650,917 + +0.5 650,918 - +0.1 650,942 + -1.5 650,942 + -0.6 650,961 + -0.1 651,113 + yjjA NOLOHH_03680 0.34 -1.8 651,117 + yjjA NOLOHH_03680 0.34 -1.8 651,117 + yjjA NOLOHH_03680 0.34 -2.3 651,117 + yjjA NOLOHH_03680 0.34 -0.7 651,118 - yjjA NOLOHH_03680 0.35 -2.5 651,146 + yjjA NOLOHH_03680 0.40 -0.2 651,156 + yjjA NOLOHH_03680 0.42 +0.8 651,156 + yjjA NOLOHH_03680 0.42 +0.9
Or see this region's nucleotide sequence