Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glxA and fdeC are separated by 121 nucleotides fdeC and NOLOHH_01955 are separated by 871 nucleotides
NOLOHH_01945: glxA - AraC family transcriptional regulator, at 293,846 to 294,703
glxA
NOLOHH_01950: fdeC - inverse autotransporter adhesin FdeC, at 294,825 to 299,078
fdeC
NOLOHH_01955: NOLOHH_01955 - hypothetical protein, at 299,950 to 300,069
_01955
Position (kb) 294
295
296
297
298
299
300 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 293.832 kb on + strand at 293.833 kb on - strand at 294.002 kb on + strand, within glxA at 294.234 kb on + strand, within glxA at 294.349 kb on + strand, within glxA at 294.350 kb on - strand, within glxA at 294.448 kb on - strand, within glxA at 294.448 kb on - strand, within glxA at 294.711 kb on + strand at 294.717 kb on + strand at 294.727 kb on + strand at 294.727 kb on + strand at 294.727 kb on + strand at 294.728 kb on - strand at 294.730 kb on - strand at 294.820 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.935 kb on + strand at 294.936 kb on - strand at 294.936 kb on - strand at 294.936 kb on - strand at 294.938 kb on - strand at 294.965 kb on + strand at 294.965 kb on + strand at 294.965 kb on + strand at 294.966 kb on - strand at 294.966 kb on - strand at 294.966 kb on - strand at 294.966 kb on - strand at 294.966 kb on - strand at 294.966 kb on - strand at 294.970 kb on - strand at 295.064 kb on + strand at 295.064 kb on + strand at 295.065 kb on - strand at 295.065 kb on - strand at 295.082 kb on + strand at 295.179 kb on - strand at 295.218 kb on + strand at 295.219 kb on - strand at 295.258 kb on + strand, within fdeC at 295.258 kb on + strand, within fdeC at 295.259 kb on - strand, within fdeC at 295.259 kb on - strand, within fdeC at 295.274 kb on + strand, within fdeC at 295.281 kb on - strand, within fdeC at 295.395 kb on - strand, within fdeC at 295.419 kb on - strand, within fdeC at 295.419 kb on - strand, within fdeC at 295.453 kb on + strand, within fdeC at 295.453 kb on + strand, within fdeC at 295.454 kb on - strand, within fdeC at 295.454 kb on - strand, within fdeC at 295.564 kb on + strand, within fdeC at 295.670 kb on + strand, within fdeC at 295.710 kb on - strand, within fdeC at 295.733 kb on + strand, within fdeC at 295.776 kb on + strand, within fdeC at 295.777 kb on - strand, within fdeC at 295.863 kb on - strand, within fdeC at 295.863 kb on - strand, within fdeC at 295.863 kb on - strand, within fdeC at 295.863 kb on - strand, within fdeC at 295.926 kb on + strand, within fdeC at 295.931 kb on + strand, within fdeC at 295.931 kb on + strand, within fdeC at 295.962 kb on + strand, within fdeC at 296.002 kb on + strand, within fdeC at 296.003 kb on - strand, within fdeC at 296.003 kb on - strand, within fdeC at 296.061 kb on - strand, within fdeC at 296.078 kb on + strand, within fdeC at 296.079 kb on - strand, within fdeC at 296.096 kb on + strand, within fdeC at 296.212 kb on + strand, within fdeC at 296.212 kb on + strand, within fdeC at 296.212 kb on + strand, within fdeC at 296.213 kb on - strand, within fdeC at 296.213 kb on - strand, within fdeC at 296.213 kb on - strand, within fdeC at 296.213 kb on - strand, within fdeC at 296.283 kb on - strand, within fdeC at 296.399 kb on + strand, within fdeC at 296.514 kb on - strand, within fdeC at 296.522 kb on + strand, within fdeC at 296.522 kb on + strand, within fdeC at 296.523 kb on - strand, within fdeC at 296.523 kb on - strand, within fdeC at 296.523 kb on - strand, within fdeC at 296.530 kb on + strand, within fdeC at 296.530 kb on + strand, within fdeC at 296.530 kb on + strand, within fdeC at 296.531 kb on - strand, within fdeC at 296.531 kb on - strand, within fdeC at 296.680 kb on - strand, within fdeC at 296.680 kb on - strand, within fdeC at 296.743 kb on - strand, within fdeC at 296.779 kb on - strand, within fdeC at 296.789 kb on + strand, within fdeC at 296.823 kb on - strand, within fdeC at 296.823 kb on - strand, within fdeC at 296.852 kb on + strand, within fdeC at 296.853 kb on - strand, within fdeC at 296.853 kb on - strand, within fdeC at 296.873 kb on + strand, within fdeC at 296.942 kb on - strand, within fdeC at 297.063 kb on + strand, within fdeC at 297.063 kb on + strand, within fdeC at 297.063 kb on + strand, within fdeC at 297.063 kb on + strand, within fdeC at 297.064 kb on - strand, within fdeC at 297.064 kb on - strand, within fdeC at 297.064 kb on - strand, within fdeC at 297.064 kb on - strand, within fdeC at 297.080 kb on - strand, within fdeC at 297.099 kb on + strand, within fdeC at 297.099 kb on + strand, within fdeC at 297.100 kb on - strand, within fdeC at 297.100 kb on - strand, within fdeC at 297.100 kb on - strand, within fdeC at 297.100 kb on - strand, within fdeC at 297.100 kb on - strand, within fdeC at 297.156 kb on + strand, within fdeC at 297.157 kb on - strand, within fdeC at 297.275 kb on - strand, within fdeC at 297.275 kb on - strand, within fdeC at 297.405 kb on - strand, within fdeC at 297.437 kb on + strand, within fdeC at 297.438 kb on - strand, within fdeC at 297.451 kb on + strand, within fdeC at 297.533 kb on + strand, within fdeC at 297.555 kb on + strand, within fdeC at 297.555 kb on + strand, within fdeC at 297.555 kb on + strand, within fdeC at 297.556 kb on - strand, within fdeC at 297.790 kb on + strand, within fdeC at 297.793 kb on + strand, within fdeC at 297.794 kb on - strand, within fdeC at 297.794 kb on - strand, within fdeC at 297.794 kb on - strand, within fdeC at 297.804 kb on - strand, within fdeC at 297.804 kb on - strand, within fdeC at 297.815 kb on - strand, within fdeC at 297.828 kb on + strand, within fdeC at 297.877 kb on - strand, within fdeC at 297.962 kb on + strand, within fdeC at 297.962 kb on + strand, within fdeC at 297.971 kb on + strand, within fdeC at 297.972 kb on - strand, within fdeC at 297.990 kb on - strand, within fdeC at 298.032 kb on - strand, within fdeC at 298.034 kb on + strand, within fdeC at 298.051 kb on + strand, within fdeC at 298.134 kb on - strand, within fdeC at 298.134 kb on - strand, within fdeC at 298.134 kb on - strand, within fdeC at 298.218 kb on - strand, within fdeC at 298.219 kb on + strand, within fdeC at 298.219 kb on + strand, within fdeC at 298.220 kb on - strand, within fdeC at 298.220 kb on - strand, within fdeC at 298.238 kb on + strand, within fdeC at 298.238 kb on + strand, within fdeC at 298.262 kb on + strand, within fdeC at 298.295 kb on - strand, within fdeC at 298.298 kb on - strand, within fdeC at 298.298 kb on - strand, within fdeC at 298.298 kb on - strand, within fdeC at 298.298 kb on - strand, within fdeC at 298.298 kb on - strand, within fdeC at 298.298 kb on - strand, within fdeC at 298.306 kb on + strand, within fdeC at 298.306 kb on + strand, within fdeC at 298.307 kb on - strand, within fdeC at 298.341 kb on + strand, within fdeC at 298.342 kb on - strand, within fdeC at 298.342 kb on - strand, within fdeC at 298.342 kb on - strand, within fdeC at 298.342 kb on - strand, within fdeC at 298.345 kb on + strand, within fdeC at 298.345 kb on + strand, within fdeC at 298.391 kb on - strand, within fdeC at 298.434 kb on - strand, within fdeC at 298.436 kb on - strand, within fdeC at 298.471 kb on + strand, within fdeC at 298.510 kb on - strand, within fdeC at 298.614 kb on + strand, within fdeC at 298.637 kb on + strand, within fdeC at 298.638 kb on - strand, within fdeC at 298.638 kb on - strand, within fdeC at 298.638 kb on - strand, within fdeC at 298.767 kb on - strand at 298.884 kb on - strand at 299.719 kb on - strand at 299.726 kb on + strand at 299.729 kb on + strand at 299.853 kb on + strand at 299.854 kb on - strand at 299.854 kb on - strand at 299.857 kb on + strand at 299.867 kb on - strand at 299.881 kb on + strand at 299.882 kb on - strand at 299.925 kb on - strand at 299.941 kb on + strand at 299.949 kb on + strand at 299.950 kb on - strand at 300.045 kb on + strand, within NOLOHH_01955 at 300.045 kb on + strand, within NOLOHH_01955 at 300.046 kb on - strand, within NOLOHH_01955 at 300.046 kb on - strand, within NOLOHH_01955
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 293,832 + -0.7 293,833 - +0.6 294,002 + glxA NOLOHH_01945 0.18 -0.1 294,234 + glxA NOLOHH_01945 0.45 -1.6 294,349 + glxA NOLOHH_01945 0.59 +1.2 294,350 - glxA NOLOHH_01945 0.59 +1.4 294,448 - glxA NOLOHH_01945 0.70 +1.8 294,448 - glxA NOLOHH_01945 0.70 +0.5 294,711 + +1.4 294,717 + -1.1 294,727 + -0.4 294,727 + -4.1 294,727 + +1.8 294,728 - -0.8 294,730 - -2.0 294,820 - +1.0 294,911 - -0.4 294,911 - -0.9 294,911 - -0.4 294,935 + +0.8 294,936 - -0.0 294,936 - -0.3 294,936 - -2.4 294,938 - +0.3 294,965 + +1.9 294,965 + -0.8 294,965 + +0.8 294,966 - +0.2 294,966 - +1.0 294,966 - +1.9 294,966 - +0.9 294,966 - +0.0 294,966 - -0.3 294,970 - +2.1 295,064 + +0.6 295,064 + -0.3 295,065 - +0.8 295,065 - -0.7 295,082 + +0.2 295,179 - -0.4 295,218 + -1.4 295,219 - +0.2 295,258 + fdeC NOLOHH_01950 0.10 +0.3 295,258 + fdeC NOLOHH_01950 0.10 -1.9 295,259 - fdeC NOLOHH_01950 0.10 +0.3 295,259 - fdeC NOLOHH_01950 0.10 -0.2 295,274 + fdeC NOLOHH_01950 0.11 +2.2 295,281 - fdeC NOLOHH_01950 0.11 +0.4 295,395 - fdeC NOLOHH_01950 0.13 +0.6 295,419 - fdeC NOLOHH_01950 0.14 -1.5 295,419 - fdeC NOLOHH_01950 0.14 +1.2 295,453 + fdeC NOLOHH_01950 0.15 +0.8 295,453 + fdeC NOLOHH_01950 0.15 +0.6 295,454 - fdeC NOLOHH_01950 0.15 +0.1 295,454 - fdeC NOLOHH_01950 0.15 -0.2 295,564 + fdeC NOLOHH_01950 0.17 +1.4 295,670 + fdeC NOLOHH_01950 0.20 +0.9 295,710 - fdeC NOLOHH_01950 0.21 +2.9 295,733 + fdeC NOLOHH_01950 0.21 +0.5 295,776 + fdeC NOLOHH_01950 0.22 -2.7 295,777 - fdeC NOLOHH_01950 0.22 -0.6 295,863 - fdeC NOLOHH_01950 0.24 +1.2 295,863 - fdeC NOLOHH_01950 0.24 -0.2 295,863 - fdeC NOLOHH_01950 0.24 -0.7 295,863 - fdeC NOLOHH_01950 0.24 +1.4 295,926 + fdeC NOLOHH_01950 0.26 -0.5 295,931 + fdeC NOLOHH_01950 0.26 -0.3 295,931 + fdeC NOLOHH_01950 0.26 -1.0 295,962 + fdeC NOLOHH_01950 0.27 -1.4 296,002 + fdeC NOLOHH_01950 0.28 -0.3 296,003 - fdeC NOLOHH_01950 0.28 +0.2 296,003 - fdeC NOLOHH_01950 0.28 -0.6 296,061 - fdeC NOLOHH_01950 0.29 -1.4 296,078 + fdeC NOLOHH_01950 0.29 -0.5 296,079 - fdeC NOLOHH_01950 0.29 +0.3 296,096 + fdeC NOLOHH_01950 0.30 -1.1 296,212 + fdeC NOLOHH_01950 0.33 +0.8 296,212 + fdeC NOLOHH_01950 0.33 -1.5 296,212 + fdeC NOLOHH_01950 0.33 -0.2 296,213 - fdeC NOLOHH_01950 0.33 +0.6 296,213 - fdeC NOLOHH_01950 0.33 +1.5 296,213 - fdeC NOLOHH_01950 0.33 +0.9 296,213 - fdeC NOLOHH_01950 0.33 -2.8 296,283 - fdeC NOLOHH_01950 0.34 -0.2 296,399 + fdeC NOLOHH_01950 0.37 +1.7 296,514 - fdeC NOLOHH_01950 0.40 +1.1 296,522 + fdeC NOLOHH_01950 0.40 -1.8 296,522 + fdeC NOLOHH_01950 0.40 +2.0 296,523 - fdeC NOLOHH_01950 0.40 -0.4 296,523 - fdeC NOLOHH_01950 0.40 +0.1 296,523 - fdeC NOLOHH_01950 0.40 +0.6 296,530 + fdeC NOLOHH_01950 0.40 +0.4 296,530 + fdeC NOLOHH_01950 0.40 -0.4 296,530 + fdeC NOLOHH_01950 0.40 +1.0 296,531 - fdeC NOLOHH_01950 0.40 -0.7 296,531 - fdeC NOLOHH_01950 0.40 -0.3 296,680 - fdeC NOLOHH_01950 0.44 -0.5 296,680 - fdeC NOLOHH_01950 0.44 -0.9 296,743 - fdeC NOLOHH_01950 0.45 +0.2 296,779 - fdeC NOLOHH_01950 0.46 -3.5 296,789 + fdeC NOLOHH_01950 0.46 +0.3 296,823 - fdeC NOLOHH_01950 0.47 +0.1 296,823 - fdeC NOLOHH_01950 0.47 +0.0 296,852 + fdeC NOLOHH_01950 0.48 -1.2 296,853 - fdeC NOLOHH_01950 0.48 +0.6 296,853 - fdeC NOLOHH_01950 0.48 -1.5 296,873 + fdeC NOLOHH_01950 0.48 -0.8 296,942 - fdeC NOLOHH_01950 0.50 +0.4 297,063 + fdeC NOLOHH_01950 0.53 +1.2 297,063 + fdeC NOLOHH_01950 0.53 +0.0 297,063 + fdeC NOLOHH_01950 0.53 -0.1 297,063 + fdeC NOLOHH_01950 0.53 -0.3 297,064 - fdeC NOLOHH_01950 0.53 +0.6 297,064 - fdeC NOLOHH_01950 0.53 +1.0 297,064 - fdeC NOLOHH_01950 0.53 +0.7 297,064 - fdeC NOLOHH_01950 0.53 +0.9 297,080 - fdeC NOLOHH_01950 0.53 -3.2 297,099 + fdeC NOLOHH_01950 0.53 -2.0 297,099 + fdeC NOLOHH_01950 0.53 +1.7 297,100 - fdeC NOLOHH_01950 0.53 +0.5 297,100 - fdeC NOLOHH_01950 0.53 +0.9 297,100 - fdeC NOLOHH_01950 0.53 +0.1 297,100 - fdeC NOLOHH_01950 0.53 -0.1 297,100 - fdeC NOLOHH_01950 0.53 -0.3 297,156 + fdeC NOLOHH_01950 0.55 -2.7 297,157 - fdeC NOLOHH_01950 0.55 +1.2 297,275 - fdeC NOLOHH_01950 0.58 -0.3 297,275 - fdeC NOLOHH_01950 0.58 +1.2 297,405 - fdeC NOLOHH_01950 0.61 -1.2 297,437 + fdeC NOLOHH_01950 0.61 +0.7 297,438 - fdeC NOLOHH_01950 0.61 -0.4 297,451 + fdeC NOLOHH_01950 0.62 -0.6 297,533 + fdeC NOLOHH_01950 0.64 -2.0 297,555 + fdeC NOLOHH_01950 0.64 -0.5 297,555 + fdeC NOLOHH_01950 0.64 +0.9 297,555 + fdeC NOLOHH_01950 0.64 -1.9 297,556 - fdeC NOLOHH_01950 0.64 -1.9 297,790 + fdeC NOLOHH_01950 0.70 -0.1 297,793 + fdeC NOLOHH_01950 0.70 +0.5 297,794 - fdeC NOLOHH_01950 0.70 -2.0 297,794 - fdeC NOLOHH_01950 0.70 +0.1 297,794 - fdeC NOLOHH_01950 0.70 -0.9 297,804 - fdeC NOLOHH_01950 0.70 -0.3 297,804 - fdeC NOLOHH_01950 0.70 -1.0 297,815 - fdeC NOLOHH_01950 0.70 -0.3 297,828 + fdeC NOLOHH_01950 0.71 -1.1 297,877 - fdeC NOLOHH_01950 0.72 -0.0 297,962 + fdeC NOLOHH_01950 0.74 +0.9 297,962 + fdeC NOLOHH_01950 0.74 +0.8 297,971 + fdeC NOLOHH_01950 0.74 -1.8 297,972 - fdeC NOLOHH_01950 0.74 +0.6 297,990 - fdeC NOLOHH_01950 0.74 +1.0 298,032 - fdeC NOLOHH_01950 0.75 +1.4 298,034 + fdeC NOLOHH_01950 0.75 -0.1 298,051 + fdeC NOLOHH_01950 0.76 -1.0 298,134 - fdeC NOLOHH_01950 0.78 -0.4 298,134 - fdeC NOLOHH_01950 0.78 +1.1 298,134 - fdeC NOLOHH_01950 0.78 +0.1 298,218 - fdeC NOLOHH_01950 0.80 +0.3 298,219 + fdeC NOLOHH_01950 0.80 +0.9 298,219 + fdeC NOLOHH_01950 0.80 +0.2 298,220 - fdeC NOLOHH_01950 0.80 +0.7 298,220 - fdeC NOLOHH_01950 0.80 +0.8 298,238 + fdeC NOLOHH_01950 0.80 -0.8 298,238 + fdeC NOLOHH_01950 0.80 -0.9 298,262 + fdeC NOLOHH_01950 0.81 -1.7 298,295 - fdeC NOLOHH_01950 0.82 -1.1 298,298 - fdeC NOLOHH_01950 0.82 -0.2 298,298 - fdeC NOLOHH_01950 0.82 -3.4 298,298 - fdeC NOLOHH_01950 0.82 +0.6 298,298 - fdeC NOLOHH_01950 0.82 -1.5 298,298 - fdeC NOLOHH_01950 0.82 +2.3 298,298 - fdeC NOLOHH_01950 0.82 -3.0 298,306 + fdeC NOLOHH_01950 0.82 +0.5 298,306 + fdeC NOLOHH_01950 0.82 +0.1 298,307 - fdeC NOLOHH_01950 0.82 -0.3 298,341 + fdeC NOLOHH_01950 0.83 +1.9 298,342 - fdeC NOLOHH_01950 0.83 +1.2 298,342 - fdeC NOLOHH_01950 0.83 +0.2 298,342 - fdeC NOLOHH_01950 0.83 +0.7 298,342 - fdeC NOLOHH_01950 0.83 +0.6 298,345 + fdeC NOLOHH_01950 0.83 -4.2 298,345 + fdeC NOLOHH_01950 0.83 +0.1 298,391 - fdeC NOLOHH_01950 0.84 -0.6 298,434 - fdeC NOLOHH_01950 0.85 -3.4 298,436 - fdeC NOLOHH_01950 0.85 -1.0 298,471 + fdeC NOLOHH_01950 0.86 -1.8 298,510 - fdeC NOLOHH_01950 0.87 +1.1 298,614 + fdeC NOLOHH_01950 0.89 -0.5 298,637 + fdeC NOLOHH_01950 0.90 -0.9 298,638 - fdeC NOLOHH_01950 0.90 -0.3 298,638 - fdeC NOLOHH_01950 0.90 -0.8 298,638 - fdeC NOLOHH_01950 0.90 +1.4 298,767 - -0.3 298,884 - -0.1 299,719 - +0.2 299,726 + -0.0 299,729 + +1.3 299,853 + -0.1 299,854 - -0.7 299,854 - -1.2 299,857 + -0.1 299,867 - +0.6 299,881 + -0.8 299,882 - +0.0 299,925 - -2.0 299,941 + -1.2 299,949 + +1.7 299,950 - -0.2 300,045 + NOLOHH_01955 0.79 -0.6 300,045 + NOLOHH_01955 0.79 -2.3 300,046 - NOLOHH_01955 0.80 -0.5 300,046 - NOLOHH_01955 0.80 -0.2
Or see this region's nucleotide sequence