Strain Fitness in Erwinia amylovora T8 around OLJFJH_01895

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01890 and OLJFJH_01895 are separated by 17 nucleotidesOLJFJH_01895 and OLJFJH_01900 are separated by 19 nucleotidesOLJFJH_01900 and OLJFJH_01905 are separated by 24 nucleotides OLJFJH_01890: OLJFJH_01890 - DotU family type VI secretion system protein, at 335,591 to 336,832 _01890 OLJFJH_01895: OLJFJH_01895 - type VI secretion system baseplate subunit TssK, at 336,850 to 338,193 _01895 OLJFJH_01900: OLJFJH_01900 - type VI secretion system lipoprotein TssJ, at 338,213 to 338,725 _01900 OLJFJH_01905: OLJFJH_01905 - SH3 domain-containing protein, at 338,750 to 339,250 _01905 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 336.120 kb on + strand, within OLJFJH_01890at 336.120 kb on + strand, within OLJFJH_01890at 336.120 kb on + strand, within OLJFJH_01890at 336.145 kb on + strand, within OLJFJH_01890at 336.145 kb on + strand, within OLJFJH_01890at 336.146 kb on - strand, within OLJFJH_01890at 336.146 kb on - strand, within OLJFJH_01890at 336.147 kb on + strand, within OLJFJH_01890at 336.148 kb on - strand, within OLJFJH_01890at 336.148 kb on - strand, within OLJFJH_01890at 336.166 kb on + strand, within OLJFJH_01890at 336.167 kb on - strand, within OLJFJH_01890at 336.167 kb on - strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.178 kb on - strand, within OLJFJH_01890at 336.178 kb on - strand, within OLJFJH_01890at 336.503 kb on - strand, within OLJFJH_01890at 336.503 kb on - strand, within OLJFJH_01890at 336.560 kb on - strand, within OLJFJH_01890at 336.586 kb on + strand, within OLJFJH_01890at 336.772 kb on + strandat 336.772 kb on + strandat 336.773 kb on - strandat 336.986 kb on + strand, within OLJFJH_01895at 337.038 kb on + strand, within OLJFJH_01895at 337.038 kb on + strand, within OLJFJH_01895at 337.038 kb on + strand, within OLJFJH_01895at 337.489 kb on - strand, within OLJFJH_01895at 337.513 kb on - strand, within OLJFJH_01895at 337.531 kb on + strand, within OLJFJH_01895at 337.590 kb on - strand, within OLJFJH_01895at 337.620 kb on + strand, within OLJFJH_01895at 337.620 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.638 kb on - strand, within OLJFJH_01895at 337.638 kb on - strand, within OLJFJH_01895at 337.683 kb on + strand, within OLJFJH_01895at 337.747 kb on + strand, within OLJFJH_01895at 337.897 kb on + strand, within OLJFJH_01895at 337.972 kb on + strand, within OLJFJH_01895at 337.973 kb on - strand, within OLJFJH_01895at 338.174 kb on - strandat 338.342 kb on - strand, within OLJFJH_01900at 338.515 kb on - strand, within OLJFJH_01900at 338.532 kb on - strand, within OLJFJH_01900at 338.620 kb on - strand, within OLJFJH_01900at 338.871 kb on - strand, within OLJFJH_01905at 338.919 kb on + strand, within OLJFJH_01905at 338.919 kb on + strand, within OLJFJH_01905at 338.919 kb on + strand, within OLJFJH_01905at 338.920 kb on - strand, within OLJFJH_01905at 338.920 kb on - strand, within OLJFJH_01905at 339.064 kb on - strand, within OLJFJH_01905at 339.095 kb on - strand, within OLJFJH_01905at 339.116 kb on - strand, within OLJFJH_01905

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8
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336,120 + OLJFJH_01890 0.43 -0.6
336,120 + OLJFJH_01890 0.43 -2.2
336,120 + OLJFJH_01890 0.43 -1.2
336,145 + OLJFJH_01890 0.45 -2.1
336,145 + OLJFJH_01890 0.45 -0.8
336,146 - OLJFJH_01890 0.45 -0.6
336,146 - OLJFJH_01890 0.45 -0.6
336,147 + OLJFJH_01890 0.45 -1.4
336,148 - OLJFJH_01890 0.45 +0.2
336,148 - OLJFJH_01890 0.45 -0.1
336,166 + OLJFJH_01890 0.46 -1.8
336,167 - OLJFJH_01890 0.46 -1.5
336,167 - OLJFJH_01890 0.46 -0.4
336,177 + OLJFJH_01890 0.47 -1.1
336,177 + OLJFJH_01890 0.47 -1.0
336,177 + OLJFJH_01890 0.47 -0.6
336,177 + OLJFJH_01890 0.47 -0.8
336,177 + OLJFJH_01890 0.47 -0.5
336,177 + OLJFJH_01890 0.47 -0.1
336,178 - OLJFJH_01890 0.47 -0.1
336,178 - OLJFJH_01890 0.47 -1.0
336,503 - OLJFJH_01890 0.73 -0.4
336,503 - OLJFJH_01890 0.73 -0.3
336,560 - OLJFJH_01890 0.78 -1.1
336,586 + OLJFJH_01890 0.80 -1.8
336,772 + -1.1
336,772 + -1.8
336,773 - -0.3
336,986 + OLJFJH_01895 0.10 -1.2
337,038 + OLJFJH_01895 0.14 -0.3
337,038 + OLJFJH_01895 0.14 -1.4
337,038 + OLJFJH_01895 0.14 -0.5
337,489 - OLJFJH_01895 0.48 -0.4
337,513 - OLJFJH_01895 0.49 +0.4
337,531 + OLJFJH_01895 0.51 -1.2
337,590 - OLJFJH_01895 0.55 +0.2
337,620 + OLJFJH_01895 0.57 -1.5
337,620 + OLJFJH_01895 0.57 -1.8
337,637 + OLJFJH_01895 0.59 -1.1
337,637 + OLJFJH_01895 0.59 -2.0
337,637 + OLJFJH_01895 0.59 -1.0
337,637 + OLJFJH_01895 0.59 -1.3
337,637 + OLJFJH_01895 0.59 -1.1
337,638 - OLJFJH_01895 0.59 -0.1
337,638 - OLJFJH_01895 0.59 +0.3
337,683 + OLJFJH_01895 0.62 -2.3
337,747 + OLJFJH_01895 0.67 -1.4
337,897 + OLJFJH_01895 0.78 -1.9
337,972 + OLJFJH_01895 0.83 -1.1
337,973 - OLJFJH_01895 0.84 -0.3
338,174 - -1.1
338,342 - OLJFJH_01900 0.25 -0.0
338,515 - OLJFJH_01900 0.59 -0.0
338,532 - OLJFJH_01900 0.62 -0.4
338,620 - OLJFJH_01900 0.79 +0.4
338,871 - OLJFJH_01905 0.24 -1.1
338,919 + OLJFJH_01905 0.34 -2.1
338,919 + OLJFJH_01905 0.34 -1.0
338,919 + OLJFJH_01905 0.34 -1.7
338,920 - OLJFJH_01905 0.34 +1.3
338,920 - OLJFJH_01905 0.34 +1.5
339,064 - OLJFJH_01905 0.63 +0.7
339,095 - OLJFJH_01905 0.69 +0.1
339,116 - OLJFJH_01905 0.73 +0.1

Or see this region's nucleotide sequence