Strain Fitness in Erwinia amylovora T8 around OLJFJH_01475

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01465 and OLJFJH_01470 are separated by 127 nucleotidesOLJFJH_01470 and OLJFJH_01475 are separated by 225 nucleotidesOLJFJH_01475 and OLJFJH_01480 are separated by 267 nucleotides OLJFJH_01465: OLJFJH_01465 - acyltransferase, at 238,361 to 239,512 _01465 OLJFJH_01470: OLJFJH_01470 - molybdopterin adenylyltransferase, at 239,640 to 240,197 _01470 OLJFJH_01475: OLJFJH_01475 - transaldolase B, at 240,423 to 241,376 _01475 OLJFJH_01480: OLJFJH_01480 - peroxide stress protein YaaA, at 241,644 to 242,420 _01480 Position (kb) 240 241 242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 239.466 kb on - strandat 239.541 kb on + strandat 239.711 kb on - strand, within OLJFJH_01470at 239.754 kb on + strand, within OLJFJH_01470at 239.837 kb on + strand, within OLJFJH_01470at 239.855 kb on + strand, within OLJFJH_01470at 239.860 kb on - strand, within OLJFJH_01470at 240.169 kb on + strandat 240.169 kb on + strandat 240.169 kb on + strandat 240.170 kb on - strandat 240.210 kb on + strandat 240.211 kb on - strandat 240.211 kb on - strandat 240.211 kb on - strandat 240.216 kb on + strandat 240.228 kb on - strandat 240.244 kb on - strandat 240.266 kb on + strandat 240.273 kb on + strandat 240.277 kb on + strandat 240.277 kb on + strandat 240.277 kb on + strandat 240.278 kb on - strandat 240.278 kb on - strandat 240.278 kb on - strandat 240.278 kb on - strandat 240.288 kb on + strandat 240.289 kb on - strandat 240.375 kb on - strandat 240.389 kb on + strandat 240.390 kb on - strandat 240.410 kb on + strandat 240.410 kb on + strandat 240.430 kb on - strandat 240.430 kb on - strandat 240.570 kb on + strand, within OLJFJH_01475at 240.571 kb on - strand, within OLJFJH_01475at 240.647 kb on + strand, within OLJFJH_01475at 240.648 kb on - strand, within OLJFJH_01475at 240.740 kb on - strand, within OLJFJH_01475at 240.740 kb on - strand, within OLJFJH_01475at 240.743 kb on - strand, within OLJFJH_01475at 240.818 kb on + strand, within OLJFJH_01475at 240.818 kb on + strand, within OLJFJH_01475at 240.820 kb on + strand, within OLJFJH_01475at 240.821 kb on - strand, within OLJFJH_01475at 240.821 kb on - strand, within OLJFJH_01475at 241.020 kb on - strand, within OLJFJH_01475at 241.022 kb on - strand, within OLJFJH_01475at 241.022 kb on - strand, within OLJFJH_01475at 241.069 kb on + strand, within OLJFJH_01475at 241.069 kb on + strand, within OLJFJH_01475at 241.070 kb on - strand, within OLJFJH_01475at 241.101 kb on - strand, within OLJFJH_01475at 241.181 kb on + strand, within OLJFJH_01475at 241.182 kb on - strand, within OLJFJH_01475at 241.182 kb on - strand, within OLJFJH_01475at 241.235 kb on - strand, within OLJFJH_01475at 241.297 kb on + strandat 241.298 kb on - strandat 241.362 kb on + strandat 241.401 kb on + strandat 241.436 kb on + strandat 241.502 kb on + strandat 241.503 kb on - strandat 241.503 kb on - strandat 241.558 kb on + strandat 241.796 kb on + strand, within OLJFJH_01480at 241.797 kb on - strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.906 kb on - strand, within OLJFJH_01480at 241.970 kb on + strand, within OLJFJH_01480at 242.042 kb on + strand, within OLJFJH_01480at 242.042 kb on + strand, within OLJFJH_01480at 242.042 kb on + strand, within OLJFJH_01480at 242.043 kb on - strand, within OLJFJH_01480at 242.262 kb on + strand, within OLJFJH_01480at 242.268 kb on - strand, within OLJFJH_01480at 242.295 kb on + strand, within OLJFJH_01480at 242.295 kb on + strand, within OLJFJH_01480at 242.296 kb on - strand, within OLJFJH_01480

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8
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239,466 - +0.1
239,541 + -0.8
239,711 - OLJFJH_01470 0.13 +1.4
239,754 + OLJFJH_01470 0.20 +0.2
239,837 + OLJFJH_01470 0.35 -0.5
239,855 + OLJFJH_01470 0.39 -1.5
239,860 - OLJFJH_01470 0.39 +0.4
240,169 + -0.3
240,169 + -0.4
240,169 + -0.2
240,170 - +0.1
240,210 + -0.3
240,211 - +0.5
240,211 - +0.6
240,211 - -0.1
240,216 + -0.1
240,228 - +0.1
240,244 - +0.5
240,266 + -0.1
240,273 + -0.3
240,277 + +0.3
240,277 + -0.6
240,277 + -0.7
240,278 - -0.1
240,278 - +0.0
240,278 - -0.5
240,278 - -0.4
240,288 + -0.5
240,289 - -0.3
240,375 - -0.5
240,389 + -0.3
240,390 - +0.7
240,410 + -0.9
240,410 + -0.5
240,430 - -2.7
240,430 - +0.2
240,570 + OLJFJH_01475 0.15 -0.8
240,571 - OLJFJH_01475 0.16 -1.0
240,647 + OLJFJH_01475 0.23 -1.6
240,648 - OLJFJH_01475 0.24 -2.6
240,740 - OLJFJH_01475 0.33 -1.3
240,740 - OLJFJH_01475 0.33 -1.3
240,743 - OLJFJH_01475 0.34 -1.2
240,818 + OLJFJH_01475 0.41 -2.1
240,818 + OLJFJH_01475 0.41 -2.2
240,820 + OLJFJH_01475 0.42 -0.7
240,821 - OLJFJH_01475 0.42 -1.1
240,821 - OLJFJH_01475 0.42 -2.0
241,020 - OLJFJH_01475 0.63 -0.8
241,022 - OLJFJH_01475 0.63 -1.1
241,022 - OLJFJH_01475 0.63 -0.4
241,069 + OLJFJH_01475 0.68 -0.7
241,069 + OLJFJH_01475 0.68 -1.5
241,070 - OLJFJH_01475 0.68 -1.4
241,101 - OLJFJH_01475 0.71 -0.6
241,181 + OLJFJH_01475 0.79 -1.8
241,182 - OLJFJH_01475 0.80 -1.9
241,182 - OLJFJH_01475 0.80 -4.1
241,235 - OLJFJH_01475 0.85 -1.1
241,297 + -1.8
241,298 - -1.9
241,362 + -1.1
241,401 + -1.3
241,436 + -0.9
241,502 + -0.1
241,503 - -0.0
241,503 - +1.5
241,558 + -0.1
241,796 + OLJFJH_01480 0.20 +0.5
241,797 - OLJFJH_01480 0.20 +1.7
241,905 + OLJFJH_01480 0.34 -0.2
241,905 + OLJFJH_01480 0.34 +0.4
241,905 + OLJFJH_01480 0.34 -0.2
241,905 + OLJFJH_01480 0.34 -0.5
241,906 - OLJFJH_01480 0.34 +0.1
241,970 + OLJFJH_01480 0.42 +0.5
242,042 + OLJFJH_01480 0.51 -0.5
242,042 + OLJFJH_01480 0.51 -0.4
242,042 + OLJFJH_01480 0.51 +0.1
242,043 - OLJFJH_01480 0.51 -0.3
242,262 + OLJFJH_01480 0.80 -0.5
242,268 - OLJFJH_01480 0.80 +0.2
242,295 + OLJFJH_01480 0.84 -0.3
242,295 + OLJFJH_01480 0.84 +0.3
242,296 - OLJFJH_01480 0.84 -0.4

Or see this region's nucleotide sequence