Strain Fitness in Erwinia amylovora T8 around OLJFJH_01300

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01295 and OLJFJH_01300 are separated by 9 nucleotidesOLJFJH_01300 and OLJFJH_01305 are separated by 55 nucleotides OLJFJH_01295: OLJFJH_01295 - 3-isopropylmalate dehydratase large subunit, at 195,313 to 196,710 _01295 OLJFJH_01300: OLJFJH_01300 - 3-isopropylmalate dehydratase small subunit, at 196,720 to 197,325 _01300 OLJFJH_01305: OLJFJH_01305 - MFS transporter, at 197,381 to 198,586 _01305 Position (kb) 196 197 198Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 195.855 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.856 kb on - strand, within OLJFJH_01295at 195.969 kb on + strand, within OLJFJH_01295at 195.970 kb on - strand, within OLJFJH_01295at 195.970 kb on - strand, within OLJFJH_01295at 195.972 kb on + strand, within OLJFJH_01295at 196.034 kb on - strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.051 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.283 kb on - strand, within OLJFJH_01295at 196.283 kb on - strand, within OLJFJH_01295at 196.284 kb on + strand, within OLJFJH_01295at 196.494 kb on + strand, within OLJFJH_01295at 196.551 kb on + strand, within OLJFJH_01295at 196.551 kb on + strand, within OLJFJH_01295at 196.551 kb on + strand, within OLJFJH_01295at 196.743 kb on + strandat 196.743 kb on + strandat 196.852 kb on + strand, within OLJFJH_01300at 196.911 kb on + strand, within OLJFJH_01300at 197.068 kb on - strand, within OLJFJH_01300at 197.177 kb on + strand, within OLJFJH_01300at 197.178 kb on - strand, within OLJFJH_01300at 197.239 kb on - strand, within OLJFJH_01300at 197.504 kb on + strand, within OLJFJH_01305at 197.611 kb on + strand, within OLJFJH_01305at 197.612 kb on - strand, within OLJFJH_01305at 197.612 kb on - strand, within OLJFJH_01305at 197.612 kb on - strand, within OLJFJH_01305at 197.616 kb on - strand, within OLJFJH_01305at 197.616 kb on - strand, within OLJFJH_01305at 197.626 kb on + strand, within OLJFJH_01305at 197.766 kb on + strand, within OLJFJH_01305at 197.766 kb on + strand, within OLJFJH_01305at 197.766 kb on + strand, within OLJFJH_01305at 197.766 kb on + strand, within OLJFJH_01305at 197.766 kb on + strand, within OLJFJH_01305at 197.767 kb on - strand, within OLJFJH_01305at 197.767 kb on - strand, within OLJFJH_01305at 197.865 kb on + strand, within OLJFJH_01305at 197.865 kb on + strand, within OLJFJH_01305at 197.886 kb on + strand, within OLJFJH_01305at 197.923 kb on + strand, within OLJFJH_01305at 198.042 kb on - strand, within OLJFJH_01305at 198.073 kb on + strand, within OLJFJH_01305at 198.076 kb on + strand, within OLJFJH_01305at 198.077 kb on - strand, within OLJFJH_01305at 198.077 kb on - strand, within OLJFJH_01305at 198.077 kb on - strand, within OLJFJH_01305at 198.084 kb on + strand, within OLJFJH_01305at 198.085 kb on - strand, within OLJFJH_01305at 198.088 kb on + strand, within OLJFJH_01305at 198.089 kb on - strand, within OLJFJH_01305at 198.195 kb on + strand, within OLJFJH_01305at 198.279 kb on + strand, within OLJFJH_01305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8
remove
195,855 + OLJFJH_01295 0.39 -3.3
195,855 + OLJFJH_01295 0.39 -1.6
195,855 + OLJFJH_01295 0.39 -1.1
195,856 - OLJFJH_01295 0.39 -1.8
195,969 + OLJFJH_01295 0.47 -2.4
195,970 - OLJFJH_01295 0.47 -2.5
195,970 - OLJFJH_01295 0.47 -3.4
195,972 + OLJFJH_01295 0.47 -2.1
196,034 - OLJFJH_01295 0.52 -4.8
196,037 + OLJFJH_01295 0.52 -3.2
196,037 + OLJFJH_01295 0.52 -1.6
196,037 + OLJFJH_01295 0.52 -2.6
196,038 - OLJFJH_01295 0.52 -1.3
196,038 - OLJFJH_01295 0.52 -2.3
196,038 - OLJFJH_01295 0.52 -0.8
196,051 + OLJFJH_01295 0.53 -2.4
196,282 + OLJFJH_01295 0.69 -3.8
196,282 + OLJFJH_01295 0.69 -2.4
196,282 + OLJFJH_01295 0.69 -2.6
196,283 - OLJFJH_01295 0.69 -3.5
196,283 - OLJFJH_01295 0.69 -2.1
196,284 + OLJFJH_01295 0.69 -2.5
196,494 + OLJFJH_01295 0.84 -3.5
196,551 + OLJFJH_01295 0.89 -2.3
196,551 + OLJFJH_01295 0.89 -2.7
196,551 + OLJFJH_01295 0.89 -3.1
196,743 + -1.6
196,743 + -1.1
196,852 + OLJFJH_01300 0.22 -0.1
196,911 + OLJFJH_01300 0.32 -2.2
197,068 - OLJFJH_01300 0.57 -3.4
197,177 + OLJFJH_01300 0.75 -1.5
197,178 - OLJFJH_01300 0.76 -1.9
197,239 - OLJFJH_01300 0.86 -3.4
197,504 + OLJFJH_01305 0.10 +0.1
197,611 + OLJFJH_01305 0.19 -0.7
197,612 - OLJFJH_01305 0.19 +0.8
197,612 - OLJFJH_01305 0.19 -0.2
197,612 - OLJFJH_01305 0.19 +0.1
197,616 - OLJFJH_01305 0.19 +0.7
197,616 - OLJFJH_01305 0.19 +1.0
197,626 + OLJFJH_01305 0.20 +0.3
197,766 + OLJFJH_01305 0.32 +0.2
197,766 + OLJFJH_01305 0.32 +0.4
197,766 + OLJFJH_01305 0.32 -0.4
197,766 + OLJFJH_01305 0.32 -0.6
197,766 + OLJFJH_01305 0.32 -0.3
197,767 - OLJFJH_01305 0.32 -0.1
197,767 - OLJFJH_01305 0.32 -0.5
197,865 + OLJFJH_01305 0.40 +0.8
197,865 + OLJFJH_01305 0.40 -0.7
197,886 + OLJFJH_01305 0.42 +0.2
197,923 + OLJFJH_01305 0.45 +0.2
198,042 - OLJFJH_01305 0.55 -0.5
198,073 + OLJFJH_01305 0.57 +0.7
198,076 + OLJFJH_01305 0.58 -0.2
198,077 - OLJFJH_01305 0.58 +0.7
198,077 - OLJFJH_01305 0.58 -0.1
198,077 - OLJFJH_01305 0.58 -0.1
198,084 + OLJFJH_01305 0.58 +0.1
198,085 - OLJFJH_01305 0.58 +0.4
198,088 + OLJFJH_01305 0.59 -1.4
198,089 - OLJFJH_01305 0.59 +0.7
198,195 + OLJFJH_01305 0.67 -0.5
198,279 + OLJFJH_01305 0.74 -0.2

Or see this region's nucleotide sequence