Strain Fitness in Erwinia amylovora T8 around OLJFJH_01290

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01285 and OLJFJH_01290 are separated by 1 nucleotidesOLJFJH_01290 and OLJFJH_01295 are separated by 4 nucleotides OLJFJH_01285: OLJFJH_01285 - 2-isopropylmalate synthase, at 192,650 to 194,218 _01285 OLJFJH_01290: OLJFJH_01290 - 3-isopropylmalate dehydrogenase, at 194,220 to 195,308 _01290 OLJFJH_01295: OLJFJH_01295 - 3-isopropylmalate dehydratase large subunit, at 195,313 to 196,710 _01295 Position (kb) 194 195 196Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 193.255 kb on + strand, within OLJFJH_01285at 193.448 kb on + strand, within OLJFJH_01285at 193.484 kb on - strand, within OLJFJH_01285at 193.511 kb on - strand, within OLJFJH_01285at 193.511 kb on - strand, within OLJFJH_01285at 193.620 kb on + strand, within OLJFJH_01285at 193.700 kb on + strand, within OLJFJH_01285at 193.700 kb on + strand, within OLJFJH_01285at 193.701 kb on - strand, within OLJFJH_01285at 193.718 kb on + strand, within OLJFJH_01285at 193.719 kb on - strand, within OLJFJH_01285at 193.719 kb on - strand, within OLJFJH_01285at 193.719 kb on - strand, within OLJFJH_01285at 193.790 kb on - strand, within OLJFJH_01285at 193.818 kb on - strand, within OLJFJH_01285at 193.818 kb on - strand, within OLJFJH_01285at 193.947 kb on - strand, within OLJFJH_01285at 193.956 kb on + strand, within OLJFJH_01285at 193.964 kb on - strand, within OLJFJH_01285at 193.994 kb on + strand, within OLJFJH_01285at 194.057 kb on + strand, within OLJFJH_01285at 194.057 kb on + strand, within OLJFJH_01285at 194.057 kb on + strand, within OLJFJH_01285at 194.182 kb on + strandat 194.183 kb on - strandat 194.183 kb on - strandat 194.183 kb on - strandat 194.215 kb on - strandat 194.215 kb on - strandat 194.217 kb on - strandat 194.217 kb on - strandat 194.228 kb on + strandat 194.229 kb on - strandat 194.232 kb on + strandat 194.232 kb on + strandat 194.237 kb on + strandat 194.237 kb on + strandat 194.525 kb on + strand, within OLJFJH_01290at 194.652 kb on + strand, within OLJFJH_01290at 194.653 kb on - strand, within OLJFJH_01290at 194.653 kb on - strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.719 kb on - strand, within OLJFJH_01290at 194.719 kb on - strand, within OLJFJH_01290at 194.750 kb on + strand, within OLJFJH_01290at 194.750 kb on + strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 195.151 kb on - strand, within OLJFJH_01290at 195.307 kb on - strandat 195.307 kb on - strandat 195.310 kb on - strandat 195.310 kb on - strandat 195.310 kb on - strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.326 kb on - strandat 195.326 kb on - strandat 195.385 kb on + strandat 195.385 kb on + strandat 195.385 kb on + strandat 195.385 kb on + strandat 195.593 kb on + strand, within OLJFJH_01295at 195.593 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.856 kb on - strand, within OLJFJH_01295at 195.969 kb on + strand, within OLJFJH_01295at 195.970 kb on - strand, within OLJFJH_01295at 195.970 kb on - strand, within OLJFJH_01295at 195.972 kb on + strand, within OLJFJH_01295at 196.034 kb on - strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.051 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.283 kb on - strand, within OLJFJH_01295at 196.283 kb on - strand, within OLJFJH_01295at 196.284 kb on + strand, within OLJFJH_01295

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-8
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193,255 + OLJFJH_01285 0.39 -3.1
193,448 + OLJFJH_01285 0.51 -2.9
193,484 - OLJFJH_01285 0.53 -3.2
193,511 - OLJFJH_01285 0.55 -2.5
193,511 - OLJFJH_01285 0.55 -2.8
193,620 + OLJFJH_01285 0.62 -2.2
193,700 + OLJFJH_01285 0.67 -3.4
193,700 + OLJFJH_01285 0.67 -3.6
193,701 - OLJFJH_01285 0.67 +0.2
193,718 + OLJFJH_01285 0.68 -4.5
193,719 - OLJFJH_01285 0.68 -1.3
193,719 - OLJFJH_01285 0.68 -2.9
193,719 - OLJFJH_01285 0.68 -2.4
193,790 - OLJFJH_01285 0.73 -2.7
193,818 - OLJFJH_01285 0.74 -1.9
193,818 - OLJFJH_01285 0.74 -1.9
193,947 - OLJFJH_01285 0.83 -1.4
193,956 + OLJFJH_01285 0.83 -0.1
193,964 - OLJFJH_01285 0.84 +0.1
193,994 + OLJFJH_01285 0.86 -0.9
194,057 + OLJFJH_01285 0.90 -1.0
194,057 + OLJFJH_01285 0.90 -0.4
194,057 + OLJFJH_01285 0.90 -1.5
194,182 + -0.8
194,183 - -0.5
194,183 - -2.3
194,183 - -2.3
194,215 - -2.4
194,215 - -1.8
194,217 - -3.2
194,217 - -1.5
194,228 + -2.7
194,229 - -1.9
194,232 + -1.8
194,232 + -2.7
194,237 + -2.2
194,237 + -2.4
194,525 + OLJFJH_01290 0.28 -3.9
194,652 + OLJFJH_01290 0.40 -1.9
194,653 - OLJFJH_01290 0.40 -2.7
194,653 - OLJFJH_01290 0.40 -1.5
194,718 + OLJFJH_01290 0.46 -2.9
194,718 + OLJFJH_01290 0.46 -4.1
194,718 + OLJFJH_01290 0.46 -2.4
194,719 - OLJFJH_01290 0.46 -3.0
194,719 - OLJFJH_01290 0.46 -1.3
194,750 + OLJFJH_01290 0.49 -2.8
194,750 + OLJFJH_01290 0.49 -2.1
194,751 - OLJFJH_01290 0.49 -2.3
194,751 - OLJFJH_01290 0.49 -3.2
194,751 - OLJFJH_01290 0.49 -2.8
194,849 + OLJFJH_01290 0.58 -2.7
194,849 + OLJFJH_01290 0.58 -3.5
194,849 + OLJFJH_01290 0.58 -2.3
194,888 + OLJFJH_01290 0.61 -3.5
194,888 + OLJFJH_01290 0.61 -2.8
194,888 + OLJFJH_01290 0.61 -2.4
194,889 - OLJFJH_01290 0.61 -2.6
194,889 - OLJFJH_01290 0.61 -2.2
194,889 - OLJFJH_01290 0.61 -1.0
194,889 - OLJFJH_01290 0.61 -2.1
194,889 - OLJFJH_01290 0.61 -3.0
194,889 - OLJFJH_01290 0.61 -1.6
194,892 + OLJFJH_01290 0.62 -2.8
194,892 + OLJFJH_01290 0.62 -3.2
194,892 + OLJFJH_01290 0.62 -0.8
194,892 + OLJFJH_01290 0.62 -2.9
194,892 + OLJFJH_01290 0.62 -3.6
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -2.2
194,892 + OLJFJH_01290 0.62 -0.8
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -2.2
194,892 + OLJFJH_01290 0.62 -2.3
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -1.8
194,892 + OLJFJH_01290 0.62 -2.0
194,892 + OLJFJH_01290 0.62 -3.0
194,892 + OLJFJH_01290 0.62 +0.5
194,892 + OLJFJH_01290 0.62 -4.0
194,892 + OLJFJH_01290 0.62 -2.5
194,892 + OLJFJH_01290 0.62 -1.3
194,893 - OLJFJH_01290 0.62 -2.6
194,893 - OLJFJH_01290 0.62 -1.9
194,893 - OLJFJH_01290 0.62 -0.5
194,893 - OLJFJH_01290 0.62 -1.9
194,893 - OLJFJH_01290 0.62 -2.2
194,893 - OLJFJH_01290 0.62 -2.4
194,893 - OLJFJH_01290 0.62 -2.4
194,893 - OLJFJH_01290 0.62 -3.0
194,893 - OLJFJH_01290 0.62 -3.5
194,893 - OLJFJH_01290 0.62 -3.3
194,893 - OLJFJH_01290 0.62 -2.3
194,893 - OLJFJH_01290 0.62 -1.2
194,893 - OLJFJH_01290 0.62 -2.7
194,893 - OLJFJH_01290 0.62 -3.8
194,893 - OLJFJH_01290 0.62 -1.6
195,151 - OLJFJH_01290 0.85 -2.5
195,307 - -1.3
195,307 - -2.3
195,310 - -3.0
195,310 - -2.9
195,310 - -1.8
195,325 + -2.4
195,325 + -3.9
195,325 + -2.7
195,326 - -3.1
195,326 - -2.5
195,385 + -3.4
195,385 + -3.2
195,385 + -2.9
195,385 + -2.6
195,593 + OLJFJH_01295 0.20 -0.5
195,593 + OLJFJH_01295 0.20 -2.7
195,855 + OLJFJH_01295 0.39 -3.3
195,855 + OLJFJH_01295 0.39 -1.6
195,855 + OLJFJH_01295 0.39 -1.1
195,856 - OLJFJH_01295 0.39 -1.8
195,969 + OLJFJH_01295 0.47 -2.4
195,970 - OLJFJH_01295 0.47 -2.5
195,970 - OLJFJH_01295 0.47 -3.4
195,972 + OLJFJH_01295 0.47 -2.1
196,034 - OLJFJH_01295 0.52 -4.8
196,037 + OLJFJH_01295 0.52 -3.2
196,037 + OLJFJH_01295 0.52 -1.6
196,037 + OLJFJH_01295 0.52 -2.6
196,038 - OLJFJH_01295 0.52 -1.3
196,038 - OLJFJH_01295 0.52 -2.3
196,038 - OLJFJH_01295 0.52 -0.8
196,051 + OLJFJH_01295 0.53 -2.4
196,282 + OLJFJH_01295 0.69 -3.8
196,282 + OLJFJH_01295 0.69 -2.4
196,282 + OLJFJH_01295 0.69 -2.6
196,283 - OLJFJH_01295 0.69 -3.5
196,283 - OLJFJH_01295 0.69 -2.1
196,284 + OLJFJH_01295 0.69 -2.5

Or see this region's nucleotide sequence