Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_15625 and OLJFJH_15630 are separated by 154 nucleotides OLJFJH_15630 and OLJFJH_15635 are separated by 107 nucleotides OLJFJH_15635 and OLJFJH_15640 are separated by 4 nucleotides OLJFJH_15640 and OLJFJH_15645 are separated by 57 nucleotides
OLJFJH_15625: OLJFJH_15625 - flagellar basal body rod protein FlgB, at 3,295,323 to 3,295,736
_15625
OLJFJH_15630: OLJFJH_15630 - flagellar basal body P-ring formation protein FlgA, at 3,295,891 to 3,296,559
_15630
OLJFJH_15635: OLJFJH_15635 - anti-sigma-28 factor FlgM, at 3,296,667 to 3,296,966
_15635
OLJFJH_15640: OLJFJH_15640 - flagellar biosynthesis protein FlgN, at 3,296,971 to 3,297,402
_15640
OLJFJH_15645: OLJFJH_15645 - murein biosynthesis integral membrane protein MurJ, at 3,297,460 to 3,298,998
_15645
Position (kb) 3296
3297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3295.703 kb on + strand at 3295.773 kb on + strand at 3295.773 kb on + strand at 3295.774 kb on - strand at 3295.774 kb on - strand at 3295.804 kb on + strand at 3295.805 kb on - strand at 3295.811 kb on - strand at 3295.823 kb on + strand at 3295.823 kb on + strand at 3295.824 kb on - strand at 3295.856 kb on - strand at 3295.884 kb on - strand at 3295.897 kb on - strand at 3295.897 kb on - strand at 3295.897 kb on - strand at 3295.900 kb on + strand at 3295.900 kb on + strand at 3295.901 kb on - strand at 3296.040 kb on - strand, within OLJFJH_15630 at 3296.116 kb on + strand, within OLJFJH_15630 at 3296.116 kb on + strand, within OLJFJH_15630 at 3296.117 kb on - strand, within OLJFJH_15630 at 3296.117 kb on - strand, within OLJFJH_15630 at 3296.117 kb on - strand, within OLJFJH_15630 at 3296.117 kb on - strand, within OLJFJH_15630 at 3296.117 kb on - strand, within OLJFJH_15630 at 3296.117 kb on - strand, within OLJFJH_15630 at 3296.188 kb on + strand, within OLJFJH_15630 at 3296.189 kb on - strand, within OLJFJH_15630 at 3296.291 kb on + strand, within OLJFJH_15630 at 3296.295 kb on + strand, within OLJFJH_15630 at 3296.295 kb on + strand, within OLJFJH_15630 at 3296.324 kb on + strand, within OLJFJH_15630 at 3296.404 kb on - strand, within OLJFJH_15630 at 3296.431 kb on - strand, within OLJFJH_15630 at 3296.431 kb on - strand, within OLJFJH_15630 at 3296.558 kb on - strand at 3296.598 kb on + strand at 3296.599 kb on - strand at 3296.607 kb on + strand at 3296.610 kb on + strand at 3296.610 kb on + strand at 3296.611 kb on - strand at 3296.611 kb on - strand at 3296.612 kb on + strand at 3296.612 kb on + strand at 3296.613 kb on - strand at 3296.870 kb on + strand, within OLJFJH_15635 at 3296.871 kb on - strand, within OLJFJH_15635 at 3296.965 kb on - strand at 3297.083 kb on + strand, within OLJFJH_15640 at 3297.084 kb on - strand, within OLJFJH_15640 at 3297.084 kb on - strand, within OLJFJH_15640 at 3297.086 kb on + strand, within OLJFJH_15640 at 3297.129 kb on - strand, within OLJFJH_15640 at 3297.179 kb on - strand, within OLJFJH_15640 at 3297.406 kb on + strand at 3297.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9 remove 3,295,703 + +1.2 3,295,773 + +0.1 3,295,773 + -1.4 3,295,774 - +2.6 3,295,774 - -0.4 3,295,804 + +0.1 3,295,805 - -0.5 3,295,811 - -1.0 3,295,823 + -0.9 3,295,823 + -0.0 3,295,824 - -0.0 3,295,856 - -0.9 3,295,884 - +1.5 3,295,897 - -0.7 3,295,897 - -0.2 3,295,897 - +1.2 3,295,900 + -0.3 3,295,900 + -0.7 3,295,901 - -0.5 3,296,040 - OLJFJH_15630 0.22 +0.9 3,296,116 + OLJFJH_15630 0.34 +0.1 3,296,116 + OLJFJH_15630 0.34 +0.1 3,296,117 - OLJFJH_15630 0.34 -0.2 3,296,117 - OLJFJH_15630 0.34 -0.5 3,296,117 - OLJFJH_15630 0.34 +0.9 3,296,117 - OLJFJH_15630 0.34 -2.3 3,296,117 - OLJFJH_15630 0.34 +0.8 3,296,117 - OLJFJH_15630 0.34 -1.4 3,296,188 + OLJFJH_15630 0.44 +0.4 3,296,189 - OLJFJH_15630 0.45 +0.2 3,296,291 + OLJFJH_15630 0.60 -0.5 3,296,295 + OLJFJH_15630 0.60 +0.6 3,296,295 + OLJFJH_15630 0.60 -0.2 3,296,324 + OLJFJH_15630 0.65 +3.9 3,296,404 - OLJFJH_15630 0.77 -2.8 3,296,431 - OLJFJH_15630 0.81 +1.2 3,296,431 - OLJFJH_15630 0.81 +1.2 3,296,558 - -0.1 3,296,598 + -1.1 3,296,599 - -1.1 3,296,607 + +0.7 3,296,610 + +1.0 3,296,610 + -0.2 3,296,611 - +3.2 3,296,611 - +0.3 3,296,612 + -0.8 3,296,612 + +0.3 3,296,613 - -0.6 3,296,870 + OLJFJH_15635 0.68 -0.9 3,296,871 - OLJFJH_15635 0.68 -0.6 3,296,965 - -0.4 3,297,083 + OLJFJH_15640 0.26 +1.0 3,297,084 - OLJFJH_15640 0.26 -1.0 3,297,084 - OLJFJH_15640 0.26 -0.9 3,297,086 + OLJFJH_15640 0.27 +1.4 3,297,129 - OLJFJH_15640 0.37 -1.2 3,297,179 - OLJFJH_15640 0.48 +0.2 3,297,406 + -1.1 3,297,407 - +0.1
Or see this region's nucleotide sequence