Strain Fitness in Erwinia amylovora T8 around OLJFJH_08545

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08535 and OLJFJH_08540 overlap by 114 nucleotidesOLJFJH_08540 and OLJFJH_08545 overlap by 14 nucleotidesOLJFJH_08545 and OLJFJH_08550 are separated by 82 nucleotides OLJFJH_08535: OLJFJH_08535 - type IV pili twitching motility protein PilT, at 1,750,029 to 1,751,162 _08535 OLJFJH_08540: OLJFJH_08540 - NrsF family protein, at 1,751,049 to 1,751,687 _08540 OLJFJH_08545: OLJFJH_08545 - RNA polymerase subunit sigma-70, at 1,751,674 to 1,752,240 _08545 OLJFJH_08550: OLJFJH_08550 - cytochrome C biogenesis protein, at 1,752,323 to 1,753,561 _08550 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1750.904 kb on - strand, within OLJFJH_08535at 1750.904 kb on - strand, within OLJFJH_08535at 1751.050 kb on + strandat 1751.141 kb on - strandat 1751.160 kb on + strandat 1751.161 kb on - strandat 1751.183 kb on + strand, within OLJFJH_08540at 1751.183 kb on + strand, within OLJFJH_08540at 1751.183 kb on + strand, within OLJFJH_08540at 1751.183 kb on + strand, within OLJFJH_08540at 1751.183 kb on + strand, within OLJFJH_08540at 1751.183 kb on + strand, within OLJFJH_08540at 1751.184 kb on - strand, within OLJFJH_08540at 1751.184 kb on - strand, within OLJFJH_08540at 1751.184 kb on - strand, within OLJFJH_08540at 1751.289 kb on + strand, within OLJFJH_08540at 1751.289 kb on + strand, within OLJFJH_08540at 1751.290 kb on - strand, within OLJFJH_08540at 1751.303 kb on - strand, within OLJFJH_08540at 1751.442 kb on - strand, within OLJFJH_08540at 1751.480 kb on + strand, within OLJFJH_08540at 1751.480 kb on + strand, within OLJFJH_08540at 1751.503 kb on - strand, within OLJFJH_08540at 1751.565 kb on + strand, within OLJFJH_08540at 1751.566 kb on - strand, within OLJFJH_08540at 1751.580 kb on + strand, within OLJFJH_08540at 1751.580 kb on + strand, within OLJFJH_08540at 1751.581 kb on - strand, within OLJFJH_08540at 1751.654 kb on + strandat 1751.763 kb on + strand, within OLJFJH_08545at 1751.764 kb on - strand, within OLJFJH_08545at 1751.764 kb on - strand, within OLJFJH_08545at 1751.764 kb on - strand, within OLJFJH_08545at 1752.035 kb on + strand, within OLJFJH_08545at 1752.035 kb on + strand, within OLJFJH_08545at 1752.036 kb on - strand, within OLJFJH_08545at 1752.039 kb on + strand, within OLJFJH_08545at 1752.278 kb on + strandat 1752.278 kb on + strandat 1752.278 kb on + strandat 1752.279 kb on - strandat 1752.279 kb on - strandat 1752.279 kb on - strandat 1752.283 kb on + strandat 1752.283 kb on + strandat 1752.284 kb on - strandat 1752.435 kb on + strandat 1752.435 kb on + strandat 1752.435 kb on + strandat 1752.436 kb on - strandat 1752.491 kb on - strand, within OLJFJH_08550at 1752.493 kb on - strand, within OLJFJH_08550at 1752.514 kb on + strand, within OLJFJH_08550at 1752.514 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.516 kb on + strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.517 kb on - strand, within OLJFJH_08550at 1752.703 kb on + strand, within OLJFJH_08550at 1752.704 kb on - strand, within OLJFJH_08550at 1752.736 kb on + strand, within OLJFJH_08550at 1752.737 kb on - strand, within OLJFJH_08550at 1752.782 kb on - strand, within OLJFJH_08550at 1752.811 kb on + strand, within OLJFJH_08550at 1752.811 kb on + strand, within OLJFJH_08550at 1752.811 kb on + strand, within OLJFJH_08550at 1752.811 kb on + strand, within OLJFJH_08550at 1752.811 kb on + strand, within OLJFJH_08550at 1752.812 kb on - strand, within OLJFJH_08550at 1752.854 kb on + strand, within OLJFJH_08550at 1752.855 kb on - strand, within OLJFJH_08550at 1752.855 kb on - strand, within OLJFJH_08550at 1752.860 kb on + strand, within OLJFJH_08550at 1752.920 kb on + strand, within OLJFJH_08550at 1752.920 kb on + strand, within OLJFJH_08550at 1752.920 kb on + strand, within OLJFJH_08550at 1752.920 kb on + strand, within OLJFJH_08550at 1752.921 kb on - strand, within OLJFJH_08550at 1752.921 kb on - strand, within OLJFJH_08550at 1752.921 kb on - strand, within OLJFJH_08550at 1752.921 kb on - strand, within OLJFJH_08550at 1752.921 kb on - strand, within OLJFJH_08550at 1752.922 kb on + strand, within OLJFJH_08550at 1752.922 kb on + strand, within OLJFJH_08550at 1752.923 kb on - strand, within OLJFJH_08550at 1752.923 kb on - strand, within OLJFJH_08550at 1752.923 kb on - strand, within OLJFJH_08550at 1752.923 kb on - strand, within OLJFJH_08550at 1752.923 kb on - strand, within OLJFJH_08550at 1752.923 kb on - strand, within OLJFJH_08550at 1753.030 kb on + strand, within OLJFJH_08550at 1753.031 kb on - strand, within OLJFJH_08550at 1753.037 kb on - strand, within OLJFJH_08550at 1753.223 kb on + strand, within OLJFJH_08550at 1753.223 kb on + strand, within OLJFJH_08550

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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1,750,904 - OLJFJH_08535 0.77 +0.8
1,750,904 - OLJFJH_08535 0.77 -1.2
1,751,050 + +4.4
1,751,141 - -0.3
1,751,160 + -1.8
1,751,161 - +0.6
1,751,183 + OLJFJH_08540 0.21 -0.3
1,751,183 + OLJFJH_08540 0.21 -0.8
1,751,183 + OLJFJH_08540 0.21 +0.2
1,751,183 + OLJFJH_08540 0.21 -1.3
1,751,183 + OLJFJH_08540 0.21 +1.1
1,751,183 + OLJFJH_08540 0.21 +0.5
1,751,184 - OLJFJH_08540 0.21 -0.5
1,751,184 - OLJFJH_08540 0.21 -0.8
1,751,184 - OLJFJH_08540 0.21 +1.5
1,751,289 + OLJFJH_08540 0.38 +0.2
1,751,289 + OLJFJH_08540 0.38 -0.5
1,751,290 - OLJFJH_08540 0.38 -1.0
1,751,303 - OLJFJH_08540 0.40 +0.1
1,751,442 - OLJFJH_08540 0.62 -1.0
1,751,480 + OLJFJH_08540 0.67 -0.7
1,751,480 + OLJFJH_08540 0.67 +0.4
1,751,503 - OLJFJH_08540 0.71 -1.4
1,751,565 + OLJFJH_08540 0.81 +0.9
1,751,566 - OLJFJH_08540 0.81 -0.1
1,751,580 + OLJFJH_08540 0.83 +3.5
1,751,580 + OLJFJH_08540 0.83 +2.1
1,751,581 - OLJFJH_08540 0.83 +2.4
1,751,654 + -0.7
1,751,763 + OLJFJH_08545 0.16 -0.7
1,751,764 - OLJFJH_08545 0.16 -1.5
1,751,764 - OLJFJH_08545 0.16 -0.6
1,751,764 - OLJFJH_08545 0.16 -0.8
1,752,035 + OLJFJH_08545 0.64 -0.4
1,752,035 + OLJFJH_08545 0.64 -1.9
1,752,036 - OLJFJH_08545 0.64 -0.8
1,752,039 + OLJFJH_08545 0.64 +0.5
1,752,278 + +0.6
1,752,278 + +2.6
1,752,278 + -0.3
1,752,279 - -0.2
1,752,279 - -0.5
1,752,279 - -1.5
1,752,283 + +0.5
1,752,283 + -0.4
1,752,284 - -0.0
1,752,435 + -0.4
1,752,435 + +3.4
1,752,435 + +1.2
1,752,436 - -0.2
1,752,491 - OLJFJH_08550 0.14 -0.3
1,752,493 - OLJFJH_08550 0.14 +1.1
1,752,514 + OLJFJH_08550 0.15 +0.5
1,752,514 + OLJFJH_08550 0.15 +1.2
1,752,516 + OLJFJH_08550 0.16 +0.8
1,752,516 + OLJFJH_08550 0.16 +3.9
1,752,516 + OLJFJH_08550 0.16 -0.4
1,752,516 + OLJFJH_08550 0.16 -0.1
1,752,516 + OLJFJH_08550 0.16 +3.2
1,752,516 + OLJFJH_08550 0.16 +0.1
1,752,516 + OLJFJH_08550 0.16 -0.2
1,752,517 - OLJFJH_08550 0.16 +1.4
1,752,517 - OLJFJH_08550 0.16 -0.6
1,752,517 - OLJFJH_08550 0.16 -0.7
1,752,517 - OLJFJH_08550 0.16 -1.7
1,752,517 - OLJFJH_08550 0.16 -0.1
1,752,517 - OLJFJH_08550 0.16 +0.8
1,752,517 - OLJFJH_08550 0.16 -0.2
1,752,703 + OLJFJH_08550 0.31 -0.1
1,752,704 - OLJFJH_08550 0.31 -1.2
1,752,736 + OLJFJH_08550 0.33 +0.1
1,752,737 - OLJFJH_08550 0.33 -0.5
1,752,782 - OLJFJH_08550 0.37 +0.3
1,752,811 + OLJFJH_08550 0.39 +0.9
1,752,811 + OLJFJH_08550 0.39 -0.4
1,752,811 + OLJFJH_08550 0.39 -0.1
1,752,811 + OLJFJH_08550 0.39 -0.6
1,752,811 + OLJFJH_08550 0.39 -0.2
1,752,812 - OLJFJH_08550 0.39 +0.4
1,752,854 + OLJFJH_08550 0.43 -1.1
1,752,855 - OLJFJH_08550 0.43 -0.2
1,752,855 - OLJFJH_08550 0.43 +0.1
1,752,860 + OLJFJH_08550 0.43 -1.2
1,752,920 + OLJFJH_08550 0.48 +3.6
1,752,920 + OLJFJH_08550 0.48 -1.5
1,752,920 + OLJFJH_08550 0.48 +1.3
1,752,920 + OLJFJH_08550 0.48 +1.2
1,752,921 - OLJFJH_08550 0.48 +1.2
1,752,921 - OLJFJH_08550 0.48 +2.8
1,752,921 - OLJFJH_08550 0.48 -0.4
1,752,921 - OLJFJH_08550 0.48 +0.1
1,752,921 - OLJFJH_08550 0.48 +0.4
1,752,922 + OLJFJH_08550 0.48 -0.7
1,752,922 + OLJFJH_08550 0.48 -0.6
1,752,923 - OLJFJH_08550 0.48 -1.3
1,752,923 - OLJFJH_08550 0.48 -0.8
1,752,923 - OLJFJH_08550 0.48 +6.5
1,752,923 - OLJFJH_08550 0.48 -0.4
1,752,923 - OLJFJH_08550 0.48 -0.1
1,752,923 - OLJFJH_08550 0.48 +1.4
1,753,030 + OLJFJH_08550 0.57 -0.6
1,753,031 - OLJFJH_08550 0.57 +0.4
1,753,037 - OLJFJH_08550 0.58 -0.8
1,753,223 + OLJFJH_08550 0.73 -0.6
1,753,223 + OLJFJH_08550 0.73 +0.1

Or see this region's nucleotide sequence