Strain Fitness in Erwinia amylovora T8 around OLJFJH_07885

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07880 and OLJFJH_07885 are separated by 7 nucleotidesOLJFJH_07885 and OLJFJH_07890 overlap by 26 nucleotides OLJFJH_07880: OLJFJH_07880 - Conserved uncharacterized protein, at 1,630,196 to 1,631,188 _07880 OLJFJH_07885: OLJFJH_07885 - hypothetical protein, at 1,631,196 to 1,631,654 _07885 OLJFJH_07890: OLJFJH_07890 - Transcriptional regulator, at 1,631,629 to 1,632,534 _07890 Position (kb) 1631 1632Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1630.221 kb on + strandat 1630.222 kb on - strandat 1630.224 kb on + strandat 1630.288 kb on - strandat 1630.301 kb on + strand, within OLJFJH_07880at 1630.302 kb on - strand, within OLJFJH_07880at 1630.312 kb on + strand, within OLJFJH_07880at 1630.344 kb on + strand, within OLJFJH_07880at 1630.344 kb on + strand, within OLJFJH_07880at 1630.344 kb on + strand, within OLJFJH_07880at 1630.345 kb on - strand, within OLJFJH_07880at 1630.345 kb on - strand, within OLJFJH_07880at 1630.345 kb on - strand, within OLJFJH_07880at 1630.346 kb on + strand, within OLJFJH_07880at 1630.346 kb on + strand, within OLJFJH_07880at 1630.346 kb on + strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.432 kb on + strand, within OLJFJH_07880at 1630.432 kb on + strand, within OLJFJH_07880at 1630.439 kb on - strand, within OLJFJH_07880at 1630.460 kb on + strand, within OLJFJH_07880at 1630.460 kb on + strand, within OLJFJH_07880at 1630.460 kb on + strand, within OLJFJH_07880at 1630.482 kb on + strand, within OLJFJH_07880at 1630.482 kb on + strand, within OLJFJH_07880at 1630.485 kb on - strand, within OLJFJH_07880at 1630.547 kb on - strand, within OLJFJH_07880at 1630.587 kb on + strand, within OLJFJH_07880at 1630.587 kb on + strand, within OLJFJH_07880at 1630.588 kb on - strand, within OLJFJH_07880at 1630.754 kb on - strand, within OLJFJH_07880at 1630.776 kb on + strand, within OLJFJH_07880at 1630.777 kb on - strand, within OLJFJH_07880at 1630.808 kb on + strand, within OLJFJH_07880at 1630.808 kb on + strand, within OLJFJH_07880at 1630.808 kb on + strand, within OLJFJH_07880at 1630.809 kb on - strand, within OLJFJH_07880at 1630.809 kb on - strand, within OLJFJH_07880at 1630.856 kb on - strand, within OLJFJH_07880at 1630.916 kb on + strand, within OLJFJH_07880at 1630.925 kb on + strand, within OLJFJH_07880at 1630.925 kb on + strand, within OLJFJH_07880at 1630.925 kb on + strand, within OLJFJH_07880at 1630.925 kb on + strand, within OLJFJH_07880at 1630.926 kb on - strand, within OLJFJH_07880at 1630.926 kb on - strand, within OLJFJH_07880at 1630.926 kb on - strand, within OLJFJH_07880at 1631.112 kb on - strandat 1631.146 kb on + strandat 1631.187 kb on - strandat 1631.198 kb on - strandat 1631.201 kb on - strandat 1631.201 kb on - strandat 1631.203 kb on + strandat 1631.203 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.207 kb on + strandat 1631.209 kb on + strandat 1631.209 kb on + strandat 1631.209 kb on + strandat 1631.211 kb on + strandat 1631.211 kb on + strandat 1631.211 kb on + strandat 1631.212 kb on - strandat 1631.441 kb on + strand, within OLJFJH_07885at 1631.453 kb on + strand, within OLJFJH_07885at 1631.479 kb on + strand, within OLJFJH_07885at 1631.479 kb on + strand, within OLJFJH_07885at 1631.480 kb on - strand, within OLJFJH_07885at 1631.480 kb on - strand, within OLJFJH_07885at 1631.480 kb on - strand, within OLJFJH_07885at 1631.583 kb on + strand, within OLJFJH_07885at 1631.584 kb on - strand, within OLJFJH_07885at 1631.773 kb on - strand, within OLJFJH_07890at 1631.774 kb on + strand, within OLJFJH_07890at 1631.833 kb on - strand, within OLJFJH_07890at 1631.917 kb on + strand, within OLJFJH_07890at 1631.918 kb on - strand, within OLJFJH_07890at 1631.943 kb on - strand, within OLJFJH_07890at 1631.943 kb on - strand, within OLJFJH_07890at 1631.943 kb on - strand, within OLJFJH_07890at 1631.944 kb on + strand, within OLJFJH_07890at 1632.185 kb on - strand, within OLJFJH_07890at 1632.240 kb on + strand, within OLJFJH_07890at 1632.240 kb on + strand, within OLJFJH_07890at 1632.240 kb on + strand, within OLJFJH_07890at 1632.240 kb on + strand, within OLJFJH_07890at 1632.240 kb on + strand, within OLJFJH_07890at 1632.242 kb on + strand, within OLJFJH_07890at 1632.243 kb on - strand, within OLJFJH_07890at 1632.373 kb on + strand, within OLJFJH_07890at 1632.392 kb on - strand, within OLJFJH_07890at 1632.437 kb on + strand, within OLJFJH_07890at 1632.516 kb on + strandat 1632.519 kb on + strandat 1632.526 kb on + strandat 1632.526 kb on + strandat 1632.527 kb on - strandat 1632.546 kb on - strandat 1632.592 kb on + strandat 1632.592 kb on + strandat 1632.642 kb on - strandat 1632.642 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
remove
1,630,221 + -0.6
1,630,222 - -0.3
1,630,224 + +1.2
1,630,288 - +0.4
1,630,301 + OLJFJH_07880 0.11 -0.4
1,630,302 - OLJFJH_07880 0.11 +0.1
1,630,312 + OLJFJH_07880 0.12 +0.4
1,630,344 + OLJFJH_07880 0.15 -0.8
1,630,344 + OLJFJH_07880 0.15 +2.0
1,630,344 + OLJFJH_07880 0.15 +0.7
1,630,345 - OLJFJH_07880 0.15 -0.3
1,630,345 - OLJFJH_07880 0.15 +1.8
1,630,345 - OLJFJH_07880 0.15 -0.3
1,630,346 + OLJFJH_07880 0.15 +0.4
1,630,346 + OLJFJH_07880 0.15 -1.0
1,630,346 + OLJFJH_07880 0.15 +1.8
1,630,347 - OLJFJH_07880 0.15 -0.8
1,630,347 - OLJFJH_07880 0.15 -0.7
1,630,347 - OLJFJH_07880 0.15 -0.3
1,630,347 - OLJFJH_07880 0.15 -1.0
1,630,347 - OLJFJH_07880 0.15 +0.4
1,630,348 + OLJFJH_07880 0.15 -0.2
1,630,348 + OLJFJH_07880 0.15 +0.7
1,630,348 + OLJFJH_07880 0.15 +0.6
1,630,348 + OLJFJH_07880 0.15 +0.3
1,630,348 + OLJFJH_07880 0.15 +0.1
1,630,348 + OLJFJH_07880 0.15 -1.5
1,630,348 + OLJFJH_07880 0.15 +1.1
1,630,348 + OLJFJH_07880 0.15 +1.4
1,630,348 + OLJFJH_07880 0.15 -0.4
1,630,349 - OLJFJH_07880 0.15 +0.3
1,630,349 - OLJFJH_07880 0.15 -0.9
1,630,349 - OLJFJH_07880 0.15 -0.1
1,630,349 - OLJFJH_07880 0.15 -0.3
1,630,349 - OLJFJH_07880 0.15 -1.8
1,630,349 - OLJFJH_07880 0.15 -0.4
1,630,349 - OLJFJH_07880 0.15 -0.8
1,630,349 - OLJFJH_07880 0.15 +0.1
1,630,432 + OLJFJH_07880 0.24 +0.1
1,630,432 + OLJFJH_07880 0.24 +0.6
1,630,439 - OLJFJH_07880 0.24 +1.7
1,630,460 + OLJFJH_07880 0.27 -1.1
1,630,460 + OLJFJH_07880 0.27 +0.1
1,630,460 + OLJFJH_07880 0.27 -1.7
1,630,482 + OLJFJH_07880 0.29 +0.2
1,630,482 + OLJFJH_07880 0.29 -0.2
1,630,485 - OLJFJH_07880 0.29 -0.3
1,630,547 - OLJFJH_07880 0.35 +1.5
1,630,587 + OLJFJH_07880 0.39 +1.2
1,630,587 + OLJFJH_07880 0.39 +1.2
1,630,588 - OLJFJH_07880 0.39 +1.3
1,630,754 - OLJFJH_07880 0.56 -0.5
1,630,776 + OLJFJH_07880 0.58 +0.4
1,630,777 - OLJFJH_07880 0.59 +0.0
1,630,808 + OLJFJH_07880 0.62 -0.6
1,630,808 + OLJFJH_07880 0.62 +1.1
1,630,808 + OLJFJH_07880 0.62 +0.1
1,630,809 - OLJFJH_07880 0.62 +0.0
1,630,809 - OLJFJH_07880 0.62 -0.8
1,630,856 - OLJFJH_07880 0.66 -2.5
1,630,916 + OLJFJH_07880 0.73 -0.8
1,630,925 + OLJFJH_07880 0.73 -0.6
1,630,925 + OLJFJH_07880 0.73 -0.1
1,630,925 + OLJFJH_07880 0.73 -0.2
1,630,925 + OLJFJH_07880 0.73 +0.4
1,630,926 - OLJFJH_07880 0.74 -0.4
1,630,926 - OLJFJH_07880 0.74 +0.6
1,630,926 - OLJFJH_07880 0.74 +1.7
1,631,112 - +1.8
1,631,146 + -0.3
1,631,187 - +1.1
1,631,198 - -0.2
1,631,201 - +0.5
1,631,201 - +3.9
1,631,203 + -1.1
1,631,203 + -1.3
1,631,207 + -0.2
1,631,207 + -0.5
1,631,207 + -0.1
1,631,207 + +0.1
1,631,207 + +0.5
1,631,207 + -0.4
1,631,207 + -1.5
1,631,207 + +0.5
1,631,209 + -0.4
1,631,209 + +4.3
1,631,209 + +1.1
1,631,211 + +0.9
1,631,211 + +0.0
1,631,211 + -0.9
1,631,212 - -0.1
1,631,441 + OLJFJH_07885 0.53 -0.4
1,631,453 + OLJFJH_07885 0.56 -0.1
1,631,479 + OLJFJH_07885 0.62 -1.6
1,631,479 + OLJFJH_07885 0.62 +0.2
1,631,480 - OLJFJH_07885 0.62 -0.2
1,631,480 - OLJFJH_07885 0.62 -0.7
1,631,480 - OLJFJH_07885 0.62 -1.0
1,631,583 + OLJFJH_07885 0.84 -0.4
1,631,584 - OLJFJH_07885 0.85 -1.9
1,631,773 - OLJFJH_07890 0.16 -0.4
1,631,774 + OLJFJH_07890 0.16 -0.2
1,631,833 - OLJFJH_07890 0.23 -1.2
1,631,917 + OLJFJH_07890 0.32 +0.3
1,631,918 - OLJFJH_07890 0.32 +0.7
1,631,943 - OLJFJH_07890 0.35 -1.1
1,631,943 - OLJFJH_07890 0.35 +2.6
1,631,943 - OLJFJH_07890 0.35 +0.6
1,631,944 + OLJFJH_07890 0.35 +0.9
1,632,185 - OLJFJH_07890 0.61 +1.2
1,632,240 + OLJFJH_07890 0.67 -0.6
1,632,240 + OLJFJH_07890 0.67 -0.3
1,632,240 + OLJFJH_07890 0.67 +0.7
1,632,240 + OLJFJH_07890 0.67 +0.5
1,632,240 + OLJFJH_07890 0.67 +0.2
1,632,242 + OLJFJH_07890 0.68 -0.3
1,632,243 - OLJFJH_07890 0.68 -0.9
1,632,373 + OLJFJH_07890 0.82 +0.1
1,632,392 - OLJFJH_07890 0.84 -0.6
1,632,437 + OLJFJH_07890 0.89 +1.9
1,632,516 + +0.2
1,632,519 + +0.6
1,632,526 + +0.6
1,632,526 + +0.4
1,632,527 - -0.2
1,632,546 - -0.4
1,632,592 + +1.3
1,632,592 + +0.6
1,632,642 - +0.1
1,632,642 - -0.6

Or see this region's nucleotide sequence